Pierre Tufféry

52 papers B 1Journal 47Unranked 4
YearRankTypeTitle / Venue / Authors
2023 J jnl
A refined pH-dependent coarse-grained model for peptide structure prediction in aqueous solution.
Frontiers Bioinform.
Pierre Tufféry, Philippe Derreumaux
2023 J jnl
DockSurf: A Molecular Modeling Software for the Prediction of Protein/Surface Adhesion.
J. Chem. Inf. Model.
Florent Barbault, Éric Brémond, Julien Rey, Pierre Tufféry, François Maurel
2023 J jnl
Exploring a Structural Data Mining Approach to Design Linkers for Head-to-Tail Peptide Cyclization.
J. Chem. Inf. Model.
Yasaman Karami, Samuel Murail, Julien Giribaldi, Benjamin Lefranc, Florian Defontaine, Olivier Lesouhaitier, Jérôme Leprince, Sjoerd Jacob de Vries, Pierre Tufféry
2023 J jnl
PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution.
Nucleic Acids Res.
Julien Rey, Samuel Murail, Sjoerd Jacob de Vries, Philippe Derreumaux, Pierre Tufféry
2021 J jnl
InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps.
Nucleic Acids Res.
Chloé Quignot, Guillaume Postic, Hélène Bret, Julien Rey, Pierre Granger, Samuel Murail, Pablo Chacón, Jessica Andreani, Pierre Tufféry, Raphaël Guérois
2021 J jnl
Proteo3Dnet: a web server for the integration of structural information with interactomics data.
Nucleic Acids Res.
Guillaume Postic, Jessica Andreani, Julien Marcoux, Victor Reys, Raphaël Guérois, Julien Rey, Emmanuelle Mouton-Barbosa, Yves Vandenbrouck, Sarah Cianférani, Odile Burlet-Schiltz, Gilles Labesse, Pierre Tufféry
2019 J jnl
DaReUS-Loop: a web server to model multiple loops in homology models.
Nucleic Acids Res.
Yasaman Karami, Julien Rey, Guillaume Postic, Samuel Murail, Pierre Tufféry, Sjoerd Jacob de Vries
2019 J jnl
PatchSearch: a web server for off-target protein identification.
Nucleic Acids Res.
Julien Rey, Inès Rasolohery, Pierre Tufféry, Frédéric Guyon, Gautier Moroy
2018 J jnl
InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs.
Nucleic Acids Res.
Chloé Quignot, Julien Rey, Jinchao Yu, Pierre Tufféry, Raphaël Guérois, Jessica Andreani
2017 J jnl
The pepATTRACT web server for blind, large-scale peptide-protein docking.
Nucleic Acids Res.
Sjoerd Jacob de Vries, Julien Rey, Christina E. M. Schindler, Martin Zacharias, Pierre Tufféry
2016 J jnl
A critical assessment of hidden markov model sub-optimal sampling strategies applied to the generation of peptide 3D models.
J. Comput. Chem.
Alexis Lamiable, Pierre Thévenet, Pierre Tufféry
2016 J jnl
In silico characterization of the interaction between LSKL peptide, a LAP-TGF-beta derived peptide, and ADAMTS1.
Comput. Biol. Chem.
Marie-Amandine Laurent, Dominique Bonnier, Nathalie Théret, Pierre Tufféry, Gautier Moroy
2016 J jnl
InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information.
Nucleic Acids Res.
Jinchao Yu, Marek Vavrusa, Jessica Andreani, Julien Rey, Pierre Tufféry, Raphaël Guérois
2016 J jnl
PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex.
Nucleic Acids Res.
Alexis Lamiable, Pierre Thévenet, Julien Rey, Marek Vavrusa, Philippe Derreumaux, Pierre Tufféry
2015 J jnl
BCSearch: fast structural fragment mining over large collections of protein structures.
Nucleic Acids Res.
Frédéric Guyon, François Martz, Marek Vavrusa, Jérôme Bécot, Julien Rey, Pierre Tufféry
2015 J jnl
HHalign-Kbest: exploring sub-optimal alignments for remote homology comparative modeling.
Bioinform.
Jinchao Yu, Géraldine Picord, Pierre Tufféry, Raphaël Guérois
2015 J jnl
MTiOpenScreen: a web server for structure-based virtual screening.
Nucleic Acids Res.
Céline M. Labbé, Julien Rey, David Lagorce, Marek Vavrusa, Jérôme Bécot, Olivier Sperandio, Bruno O. Villoutreix, Pierre Tufféry, Maria A. Miteva
2014 J jnl
BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes.
Database J. Biol. Databases Curation
Julien Rey, Patrick Deschavanne, Pierre Tufféry
2014 J jnl
BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes.
Database J. Biol. Databases Curation
Julien Rey, Patrick Deschavanne, Pierre Tufféry
2014 — conf
Exploring a Sub-optimal Hidden Markov Model Sampling Approach for De Novo Peptide Structure Modeling.
BIOINFORMATICS
Pierre Thévenet, Pierre Tufféry
2014 J jnl
Fast protein fragment similarity scoring using a Binet-Cauchy kernel.
Bioinform.
Frédéric Guyon, Pierre Tufféry
2014 J jnl
PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces.
Nucleic Acids Res.
Adrien Saladin, Julien Rey, Pierre Thévenet, Martin Zacharias, Gautier Moroy, Pierre Tufféry
2012 J jnl
PEP-FOLD: an updated
Nucleic Acids Res.
Pierre Thévenet, Yimin Shen, Julien Maupetit, Frédéric Guyon, Philippe Derreumaux, Pierre Tufféry
2011 J jnl
The FAF-Drugs2 server: a multistep engine to prepare electronic chemical compound collections.
Bioinform.
David Lagorce, Julien Maupetit, Jonathan B. Baell, Olivier Sperandio, Pierre Tufféry, Maria A. Miteva, Hervé Galons, Bruno O. Villoutreix
2010 J jnl
A fast method for large-scale
J. Comput. Chem.
Julien Maupetit, Philippe Derreumaux, Pierre Tufféry
2010 — conf
Bioinformatics Applications Discovery and Composition with the Mobyle Suite and MobyleNet.
RED
Hervé Ménager, Vivek Gopalan, Bertrand Néron, Sandrine Larroudé, Julien Maupetit, Adrien Saladin, Pierre Tufféry, Yentram Huyen, Bernard Caudron
2010 J jnl
Frog2: Efficient 3D conformation ensemble generator for small compounds.
Nucleic Acids Res.
Maria A. Miteva, Frédéric Guyon, Pierre Tufféry
2010 — conf
Semantic Map for Structural Bioinformatics: Enhanced Service Discovery Based on High Level Concept Ontology.
RED
Edouard Strauser, Mikaël Naveau, Hervé Ménager, Julien Maupetit, Zoé Lacroix, Pierre Tufféry
2010 J jnl
fpocket: online tools for protein ensemble pocket detection and tracking.
Nucleic Acids Res.
Peter Schmidtke, Vincent Le Guilloux, Julien Maupetit, Pierre Tufféry
2009 J jnl
Fpocket: An open source platform for ligand pocket detection.
BMC Bioinform.
Vincent Le Guilloux, Peter Schmidtke, Pierre Tufféry
2009 J jnl
Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity.
BMC Bioinform.
Flavien Quintus, Olivier Sperandio, Julien Grynberg, Michel Petitjean, Pierre Tufféry
2009 J jnl
Mobyle: a new full web bioinformatics framework.
Bioinform.
Bertrand Néron, Hervé Ménager, Corinne Maufrais, Nicolas Joly, Julien Maupetit, Sébastien Letort, Sébastien Carrère, Pierre Tufféry, Catherine Letondal
2009 J jnl
PEP-FOLD: an online resource for
Nucleic Acids Res.
Julien Maupetit, Philippe Derreumaux, Pierre Tufféry
2009 J jnl
wwLigCSRre: a 3D ligand-based server for hit identification and optimization.
Nucleic Acids Res.
Olivier Sperandio, Michel Petitjean, Pierre Tufféry
2008 J jnl
A Hidden Markov Model applied to the protein 3D structure analysis.
Comput. Stat. Data Anal.
Leslie Regad, Frédéric Guyon, Julien Maupetit, Pierre Tufféry, Anne-Claude Camproux
2007 — conf
Bioinformatics Services Discovery Using Ontology Classification.
IEEE SCW
Hervé Ménager, Zoé Lacroix, Pierre Tufféry
2007 J jnl
Frog: a FRee Online druG 3D conformation generator.
Nucleic Acids Res.
T. Bohme Leite, D. Gomes, Maria A. Miteva, Jacques Chomilier, Bruno O. Villoutreix, Pierre Tufféry
2007 J jnl
PMG: online generation of high-quality molecular pictures and storyboarded animations.
Nucleic Acids Res.
Ludovic Autin, Pierre Tufféry
2006 J jnl
FAF-Drugs: free ADME/tox filtering of compound collections.
Nucleic Acids Res.
Maria A. Miteva, Stephanie Violas, Matthieu Montès, David Gomez, Pierre Tufféry, Bruno O. Villoutreix
2006 J jnl
SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace.
Nucleic Acids Res.
Julien Maupetit, R. Gautier, Pierre Tufféry
2006 B conf
Semantic Map of Services for Structural Bioinformatics.
SSDBM
Pierre Tufféry, Zoé Lacroix, Hervé Ménager
2005 J jnl
Improved greedy algorithm for protein structure reconstruction.
J. Comput. Chem.
Pierre Tufféry, Frédéric Guyon, Philippe Derreumaux
2005 J jnl
PCE: web tools to compute protein continuum electrostatics.
Nucleic Acids Res.
Maria A. Miteva, Pierre Tufféry, Bruno O. Villoutreix
2005 J jnl
PPG: online generation of protein pictures and animations.
Nucleic Acids Res.
Cédric Binisti, Ahmed Ali Salim, Pierre Tufféry
2005 J jnl
RPBS: a web resource for structural bioinformatics.
Nucleic Acids Res.
C. Alland, François Moreews, D. Boens, Mathilde Carpentier, S. Chiusa, Mathieu Lonquety, N. Renault, Y. Wong, Hubert Cantalloube, Jacques Chomilier, Joëlle Hochez, Joël Pothier, Bruno O. Villoutreix, Jean-François Zagury, Pierre Tufféry
2004 J jnl
SA-Search: a web tool for protein structure mining based on a Structural Alphabet.
Nucleic Acids Res.
Frédéric Guyon, Anne-Claude Camproux, Joëlle Hochez, Pierre Tufféry
2004 J jnl
SCit: web tools for protein side chain conformation analysis.
Nucleic Acids Res.
R. Gautier, Anne-Claude Camproux, Pierre Tufféry
2003 J jnl
Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment.
J. Comput. Chem.
R. Gautier, Pierre Tufféry
2002 J jnl
CS-PSeq-Gen: Simulating the evolution of protein sequence under constraints.
Bioinform.
Pierre Tufféry
1999 J jnl
PredAcc: prediction of solvent accessibility.
Bioinform.
Marie-Hélène Mucchielli-Giorgi, Serge A. Hazout, Pierre Tufféry
1993 J jnl
A critical comparison of search algorithms applied to the optimization of protein side-chain conformations.
J. Comput. Chem.
Pierre Tufféry, Catherine Etchebest, Serge A. Hazout, Richard Lavery
1988 J jnl
Restriction map construction using a 'complete sentences compatibility' algorithm.
Comput. Appl. Biosci.
Pierre Tufféry, Philippe Dessen, C. Mugnier, Serge A. Hazout