Pierre Rouzé

20 papers A 1B 1C 2Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2008 A conf
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.
ISMB
Thomas Abeel, Yvan Saeys, Pierre Rouzé, Yves Van de Peer
2007 J jnl
In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists.
Bioinform.
Yvan Saeys, Pierre Rouzé, Yves Van de Peer
2005 J jnl
GeneFarm, structural and functional annotation of
Nucleic Acids Res.
Sébastien Aubourg, Véronique Brunaud, Clémence Bruyère, J. Mark Cock, Richard Cooke, Annick Cottet, Arnaud Couloux, Patrice Déhais, Gilbert Deléage, Aymeric Duclert, Manuel Echeverria, Aimée Eschbach, Denis Falconet, Ghislain Filippi, Christine Gaspin, Christophe Geourjon, Jean-Michel Grienenberger, Guy Houlné, Elisabeth Jamet, Frédéric Lechauve, Olivier Leleu, Philippe Leroy, Régis Mache, Christian Meyer, Hafed Nedjari, Ioan Negrutiu, Valérie Orsini, Eric Peyretaillade, Cyril Pommier, Jeroen Raes, Jean-Loup Risler, Stéphane Rivière, Stephane Rombauts, Pierre Rouzé, Michel Schneider, Philippe Schwob, Ian Small, Ghislain Soumayet-Kampetenga, Darko Stankovski, Claire Toffano, Michael Tognolli, Michel Caboche, Alain Lecharny
2005 J jnl
SpliceMachine: predicting splice sites from high-dimensional local context representations.
Bioinform.
Sven Degroeve, Yvan Saeys, Bernard De Baets, Pierre Rouzé, Yves Van de Peer
2004 J jnl
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.
Bioinform.
Eric Bonnet, Jan Wuyts, Pierre Rouzé, Yves Van de Peer
2004 J jnl
Feature selection for splice site prediction: A new method using EDA-based feature ranking.
BMC Bioinform.
Yvan Saeys, Sven Degroeve, Dirk Aeyels, Pierre Rouzé, Yves Van de Peer
2003 J jnl
AFLPinSilico, simulating AFLP fingerprints.
Bioinform.
Stephane Rombauts, Yves Van de Peer, Pierre Rouzé
2003 J jnl
Automatic design of gene-specific sequence tags for genome-wide functional studies.
Bioinform.
Vincent Thareau, Patrice Déhais, Carine Serizet, Pierre Hilson, Pierre Rouzé, Sébastien Aubourg
2003 J jnl
CATMA: a complete Arabidopsis GST database.
Nucleic Acids Res.
Mark L. Crowe, Carine Serizet, Vincent Thareau, Sébastien Aubourg, Pierre Rouzé, Pierre Hilson, Jim Beynon, Peter Weisbeek, Paul van Hummelen, Philippe Reymond, Javier Paz-Ares, Wilfried Nietfeld, Martin Trick
2003 C conf
Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction.
ECCB
Yvan Saeys, Sven Degroeve, Dirk Aeyels, Yves Van de Peer, Pierre Rouzé
2003 J jnl
Orphan gene finding - an exon assembly approach.
Theor. Comput. Sci.
Philippe Blayo, Pierre Rouzé, Marie-France Sagot
2002 J jnl
A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes.
J. Comput. Biol.
Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
2002 C conf
Feature subset selection for splice site prediction.
ECCB
Sven Degroeve, Bernard De Baets, Yves Van de Peer, Pierre Rouzé
2002 J jnl
INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling.
Bioinform.
Gert Thijs, Yves Moreau, Frank De Smet, Janick Mathys, Magali Lescot, Stephane Rombauts, Pierre Rouzé, Bart De Moor, Kathleen Marchal
2002 J jnl
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.
Nucleic Acids Res.
Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, Stephane Rombauts
2001 B conf
A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes.
RECOMB
Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
2001 J jnl
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.
Bioinform.
Gert Thijs, Magali Lescot, Kathleen Marchal, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
2000 — conf
EUGÈNE: An Eukaryotic Gene Finder That Combines Several Sources of Evidence.
JOBIM
Thomas Schiex, Annick Moisan, Pierre Rouzé
1999 J jnl
Evaluation of gene prediction software using a genomic data set: application to <$O_SSF>Arabidopsis thaliana<$C_SSF>sequences.
Bioinform.
Nathalie Pavy, Stephane Rombauts, Patrice Déhais, Catherine Mathé, Ramana V. Davuluri, Philippe Leroy, Pierre Rouzé
1999 J jnl
PlantCARE, a plant cis-acting regulatory element database.
Nucleic Acids Res.
Stephane Rombauts, Patrice Déhais, Marc Van Montagu, Pierre Rouzé