Pierre R. Bushel

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2017 J jnl
goSTAG: gene ontology subtrees to tag and annotate genes within a set.
Source Code Biol. Medicine
Brian D. Bennett, Pierre R. Bushel
2013 J jnl
Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes.
BMC Syst. Biol.
ClarLynda R. Williams-DeVane, David M. Reif, Elaine Cohen Hubal, Pierre R. Bushel, Edward E. Hudgens, Jane E. Gallagher, Stephen W. Edwards
2009 J jnl
Clustering of Gene Expression Data and End-Point Measurements by Simulated Annealing.
J. Bioinform. Comput. Biol.
Pierre R. Bushel
2009 J jnl
Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle.
BMC Syst. Biol.
Pierre R. Bushel, Nicholas A. Heard, Roee Gutman, Liwen Liu, Shyamal D. Peddada, Saumyadipta Pyne
2008 J jnl
CEBS - Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data.
Nucleic Acids Res.
Michael D. Waters, Stanley Stasiewicz, B. Alex Merrick, Kenneth B. Tomer, Pierre R. Bushel, Richard S. Paules, Nancy Stegman, Gerald Nehls, Kenneth J. Yost III, C. Harris Johnson, Scott F. Gustafson, Sandhya Xirasagar, Nianqing Xiao, Cheng-Cheng Huang, Paul Boyer, Denny D. Chan, Qinyan Pan, Hui Gong, John Taylor, Danielle Choi, Asif Rashid, Ayazaddin Ahmed, Reese Howle, James Selkirk, Raymond Tennant, Jennifer Fostel
2007 J jnl
Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.
BMC Bioinform.
Jeff W. Chou, Tong Zhou, William K. Kaufmann, Richard S. Paules, Pierre R. Bushel
2007 J jnl
Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes.
BMC Syst. Biol.
Pierre R. Bushel, Russell D. Wolfinger, Greg Gibson
2006 J jnl
Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application.
Bioinform.
Sandhya Xirasagar, Scott F. Gustafson, Cheng-Cheng Huang, Qinyan Pan, Jennifer Fostel, Paul Boyer, B. Alex Merrick, Kenneth B. Tomer, Denny D. Chan, Kenneth J. Yost III, Danielle Choi, Nianqing Xiao, Stanley Stasiewicz, Pierre R. Bushel, Michael D. Waters
2006 J jnl
PAGE: phase-shifted analysis of gene expression.
Bioinform.
Elo Leung, Pierre R. Bushel
2005 J jnl
Systematic Variation Normalization in Microarray Data to Get Gene Expression Comparison Unbiased.
J. Bioinform. Comput. Biol.
Jeff W. Chou, Richard S. Paules, Pierre R. Bushel
2002 J jnl
Computational selection of distinct class- and subclass-specific gene expression signatures.
J. Biomed. Informatics
Pierre R. Bushel, Hisham Hamadeh, Lee Bennett, James Green, Alan Ableson, Stephen Misener, Cynthia A. Afshari, Richard S. Paules
2001 J jnl
Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models.
J. Comput. Biol.
Russell D. Wolfinger, Greg Gibson, Elizabeth D. Wolfinger, Lee Bennett, Hisham Hamadeh, Pierre R. Bushel, Cynthia A. Afshari, Richard S. Paules
2001 J jnl
MAPS: a microarray project system for gene expression experiment information and data validation.
Bioinform.
Pierre R. Bushel, Hisham Hamadeh, Lee Bennett, Stella Sieber, Karla Martin, Emile F. Nuwaysir, Kate Johnson, Kelli Reynolds, Richard S. Paules, Cynthia A. Afshari