Philip K. Maini

61 papers Journal 54Unranked 4
YearRankTypeTitle / Venue / Authors
2026 J jnl
A new local time-decoupled squared Wasserstein-2 method for training stochastic neural networks to reconstruct uncertain parameters in dynamical systems.
Neural Networks
Mingtao Xia, Qijing Shen, Philip K. Maini, Eamonn A. Gaffney, Alex Mogilner
2025 J jnl
A new local time-decoupled squared Wasserstein-2 method for training stochastic neural networks to reconstruct uncertain parameters in dynamical systems.
CoRR
Mingtao Xia, Qijing Shen, Philip K. Maini, Eamonn A. Gaffney, Alex Mogilner
2025 J jnl
Identifiability of phenotypic adaptation from low-cell-count experiments and a stochastic model.
PLoS Comput. Biol.
Alexander P. Browning, Rebecca M. Crossley, Chiara Villa, Philip K. Maini, Adrianne L. Jenner, Tyler Cassidy, Sara Hamis
2025 J jnl
Modelling collective invasion with reaction-diffusion equations: When does domain curvature matter?
Appl. Math. Lett.
J. J. Pollacco, Ruth E. Baker, Philip K. Maini
2025 J jnl
Multiscale modelling shows how cell-ECM interactions impact ECM fibre alignment and cell detachment.
PLoS Comput. Biol.
Juan Arellano-Tintó, Daria Stepanova, Helen M. Byrne, Philip K. Maini, Tomás Alarcón
2025 J jnl
Ten simple rules for early-career researchers supervising short-term student projects.
PLoS Comput. Biol.
Rebecca M. Crossley, Philip K. Maini
2024 J jnl
Enhanced perfusion following exposure to radiotherapy: A theoretical investigation.
PLoS Comput. Biol.
Jakub Köry, Vedang Narain, Bernadette J. Stolz, Jakob Kaeppler, Bostjan Markelc, Ruth J. Muschel, Philip K. Maini, Joe Pitt-Francis, Helen M. Byrne
2024 J jnl
Homogenization of Nonlinear Blood Flow in Periodic Networks: The Limit of Small Haematocrit Heterogeneity.
Multiscale Model. Simul.
Yaron Ben-Ami, Brian D. Wood, Joe Pitt-Francis, Philip K. Maini, Helen M. Byrne
2022 J jnl
A Method to Coarse-Grain MultiAgent Stochastic Systems with Regions of Multistability.
Multiscale Model. Simul.
Daria Stepanova, Helen M. Byrne, Philip K. Maini, Tomás Alarcón
2021 J jnl
A multiscale model of complex endothelial cell dynamics in early angiogenesis.
PLoS Comput. Biol.
Daria Stepanova, Helen M. Byrne, Philip K. Maini, Tomás Alarcón
2021 J jnl
Smoothing and the environmental manifold.
Ecol. Informatics
Siddharth Unnithan Kumar, Philip K. Maini, Luca Chiaverini, Andrew J. Hearn, David W. Macdonald, Zaneta Kaszta, Samuel A. Cushman
2020 J jnl
Chaste: Cancer, Heart and Soft Tissue Environment.
J. Open Source Softw.
Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan
2019 J jnl
Clonal hematopoiesis of indeterminate potential and its impact on patient trajectories after stem cell transplantation.
PLoS Comput. Biol.
Derek S. Park, Afua Abrafi Boakye, David E. Muench, H. Leighton Grimes, Pearlie K. Epling-Burnette, Philip K. Maini, Alexander R. A. Anderson, Michael B. Bonsall
2018 J jnl
Particle-based simulations of reaction-diffusion processes with Aboria.
CoRR
Maria Bruna, Philip K. Maini, Martin Robinson
2018 J jnl
The importance of geometry in the corneal micropocket angiogenesis assay.
PLoS Comput. Biol.
James A. Grogan, Anthony J. Connor, Joe Pitt-Francis, Philip K. Maini, Helen M. Byrne
2017 J jnl
A Predator-2 Prey Fast-Slow Dynamical System for Rapid Predator Evolution.
SIAM J. Appl. Dyn. Syst.
Sofia H. Piltz, Frits Veerman, Philip K. Maini, Mason A. Porter
2017 J jnl
A hierarchical Bayesian model for understanding the spatiotemporal dynamics of the intestinal epithelium.
PLoS Comput. Biol.
Oliver J. Maclaren, Aimée Parker, Carmen Pin, Simon R. Carding, Alastair J. M. Watson, Alexander G. Fletcher, Helen M. Byrne, Philip K. Maini
2017 J jnl
Comparing individual-based approaches to modelling the self-organization of multicellular tissues.
PLoS Comput. Biol.
James M. Osborne, Alexander G. Fletcher, Joe Pitt-Francis, Philip K. Maini, David J. Gavaghan
2017 J jnl
Editorial Special Section on Multiscale Cancer Modeling.
IEEE Trans. Biomed. Eng.
Zhihui Wang, Philip K. Maini
2017 J jnl
Predicting the Influence of Microvascular Structure On Tumor Response to Radiotherapy.
IEEE Trans. Biomed. Eng.
James A. Grogan, Bostjan Markelc, Anthony J. Connor, Ruth J. Muschel, Joe Pitt-Francis, Philip K. Maini, Helen M. Byrne
2017 — ch.
Turing's Theory of Morphogenesis: Where We Started, Where We Are and Where We Want to Go.
The Incomputable
Thomas E. Woolley, Ruth E. Baker, Philip K. Maini
2017 — ch.
Turing's theory of morphogenesis.
The Turing Guide
Thomas E. Woolley, Ruth E. Baker, Philip K. Maini
2016 J jnl
Fast solvers for optimal control problems from pattern formation.
J. Comput. Phys.
Martin Stoll, John W. Pearson, Philip K. Maini
2016 J jnl
Spatial Metrics of Tumour Vascular Organisation Predict Radiation Efficacy in a Computational Model.
PLoS Comput. Biol.
Jacob G. Scott, Alexander G. Fletcher, Alexander R. A. Anderson, Philip K. Maini
2016 — ch.
Turing's Theory of Developmental Pattern Formation.
The Once and Future Turing
Philip K. Maini, Thomas E. Woolley, Eamonn A. Gaffney, Ruth E. Baker
2015 J jnl
Hybrid approaches for multiple-species stochastic reaction-diffusion models.
J. Comput. Phys.
Fabian Spill, Pilar Guerrero, Tomás Alarcón, Philip K. Maini, Helen M. Byrne
2015 J jnl
Steering Evolution with Sequential Therapy to Prevent the Emergence of Bacterial Antibiotic Resistance.
PLoS Comput. Biol.
Daniel Nichol, Peter Jeavons, Alexander G. Fletcher, Robert A. Bonomo, Philip K. Maini, Jerome L. Paul, Robert A. Gatenby, Alexander R. A. Anderson, Jacob G. Scott
2014 J jnl
Prey Switching with a Linear Preference Trade-Off.
SIAM J. Appl. Dyn. Syst.
Sofia H. Piltz, Mason A. Porter, Philip K. Maini
2014 — conf
Simulating tumour vasculature at multiple scales.
IARWISOI
James A. Grogan, Philip K. Maini, Joe Pitt-Francis, Helen M. Byrne
2013 J jnl
A Modified Oster-Murray-Harris Mechanical Model of Morphogenesis.
SIAM J. Appl. Math.
Benjamin L. Vaughan Jr., Ruth E. Baker, David Kay, Philip K. Maini
2013 J jnl
Novel Methods for Analysing Bacterial Tracks Reveal Persistence in
PLoS Comput. Biol.
Gabriel Rosser, Alexander G. Fletcher, David A. Wilkinson, Jennifer A. de Beyer, Christian A. Yates, Judith P. Armitage, Philip K. Maini, Ruth E. Baker
2013 J jnl
Systems Model of T Cell Receptor Proximal Signaling Reveals Emergent Ultrasensitivity.
PLoS Comput. Biol.
Himadri Mukhopadhyay, Shaun-Paul Cordoba, Philip K. Maini, P. Anton van der Merwe, Omer Dushek
2012 J jnl
Conformational Spread in the Flagellar Motor Switch: A Model Study.
PLoS Comput. Biol.
Qi Ma, Dan V. Nicolau Jr., Philip K. Maini, Richard M. Berry, Fan Bai
2012 J jnl
Fat versus Thin Threading Approach on GPUs: Application to Stochastic Simulation of Chemical Reactions.
IEEE Trans. Parallel Distributed Syst.
Guido Klingbeil, Radek Erban, Mike B. Giles, Philip K. Maini
2012 J jnl
Foreword.
Comput. Math. Appl.
Philip K. Maini
2012 J jnl
Modelling Hair Follicle Growth Dynamics as an Excitable Medium.
PLoS Comput. Biol.
Philip J. Murray, Philip K. Maini, Maksim V. Plikus, Cheng-Ming Chuong, Ruth E. Baker
2011 J jnl
Feedback Control Architecture and the Bacterial Chemotaxis Network.
PLoS Comput. Biol.
Abdullah Hamadeh, Mark A. J. Roberts, Elias August, Patrick E. McSharry, Philip K. Maini, Judith P. Armitage, Antonis Papachristodoulou
2011 — conf
Feedback control architecture of the R. sphaeroides chemotaxis network.
CDC/ECC
Abdullah Hamadeh, Elias August, Mark A. J. Roberts, Philip K. Maini, Judith P. Armitage, Brian P. Ingalls, Antonis Papachristodoulou
2011 J jnl
STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB.
Bioinform.
Guido Klingbeil, Radek Erban, Mike B. Giles, Philip K. Maini
2010 J jnl
An efficient and robust numerical algorithm for estimating parameters in Turing systems.
J. Comput. Phys.
Marcus R. Garvie, Philip K. Maini, Catalin Trenchea
2010 J jnl
Modeling Chemotaxis Reveals the Role of Reversed Phosphotransfer and a Bi-Functional Kinase-Phosphatase.
PLoS Comput. Biol.
Marcus J. Tindall, Steven L. Porter, Philip K. Maini, Judith P. Armitage
2009 J jnl
A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides.
BMC Syst. Biol.
Mark A. J. Roberts, Elias August, Abdullah Hamadeh, Philip K. Maini, Patrick E. McSharry, Judith P. Armitage, Antonis Papachristodoulou
2009 J jnl
Chaste: A test-driven approach to software development for biological modelling.
Comput. Phys. Commun.
Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan
2009 J jnl
Directional persistence and the optimality of run-and-tumble chemotaxis.
Comput. Biol. Chem.
Dan V. Nicolau Jr., Judith P. Armitage, Philip K. Maini
2008 J jnl
'Extremotaxis': Computing with a bacterial-inspired algorithm.
Biosyst.
Dan V. Nicolau Jr., Kevin Burrage, Dan V. Nicolau, Philip K. Maini
2008 J jnl
A theoretical study of the response of vascular tumours to different types of chemotherapy.
Math. Comput. Model.
Jasmina Panovska, Helen M. Byrne, Philip K. Maini
2008 J jnl
Turbulent Luminance in Impassioned van Gogh Paintings.
J. Math. Imaging Vis.
José Luis Aragón, Gerardo G. Naumis, Ming Bai, Manuel Torres, Philip K. Maini
2007 J jnl
Mathematical Models of Avascular Tumor Growth.
SIAM Rev.
Tiina Roose, S. Jonathan Chapman, Philip K. Maini
2007 J jnl
Velocity-induced numerical solutions of reaction-diffusion systems on continuously growing domains.
J. Comput. Phys.
Anotida Madzvamuse, Philip K. Maini
2006 — conf
Cancer disease: integrative modelling approaches.
ISBI
Helen M. Byrne, Markus R. Owen, Tomás Alarcón, Philip K. Maini
2006 J jnl
The impact of cell crowding and active cell movement on vascular tumour growth.
Networks Heterog. Media
Russell Betteridge, Markus R. Owen, Helen M. Byrne, Tomás Alarcón, Philip K. Maini
2005 J jnl
A Moving Grid Finite Element Method for the Simulation of Pattern Generation by Turing Models on Growing Domains.
J. Sci. Comput.
Anotida Madzvamuse, Philip K. Maini, Andrew J. Wathen
2005 J jnl
A Multiple Scale Model for Tumor Growth.
Multiscale Model. Simul.
Tomás Alarcón, Helen M. Byrne, Philip K. Maini
2004 — conf
The Use of Hybrid Cellular Automaton Models for Improving Cancer Therapy.
ACRI
B. Ribba, Tomás Alarcón, K. Marron, Philip K. Maini, Z. Agur
2004 J jnl
Travelling waves in a wound healing assay.
Appl. Math. Lett.
Philip K. Maini, D. L. Sean McElwain, David I. Leavesley
2002 J jnl
Analysis of tumor as an inverse problem provides a novel theoretical framework for understanding tumor biology and therapy.
Appl. Math. Lett.
Robert A. Gatenby, Philip K. Maini, Edward T. Gawlinski
2002 J jnl
Mathematical Models for Cell-Matrix Interactions during Dermal Wound Healing.
Int. J. Bifurc. Chaos
Philip K. Maini, Luke Olsen, Jonathan A. Sherratt
2002 J jnl
The Dynamics and Pinning of a Spike for a Reaction-Diffusion System.
SIAM J. Appl. Math.
Darragh McInerney, David Gavaghan, Michael Jeffrey Ward, Paul Houston, Philip K. Maini
2000 J jnl
An Envelope Method for Analyzing Sequential Pattern Formation.
SIAM J. Appl. Math.
Gerhard C. Cruywagen, James D. Murray, Philip K. Maini
1997 J jnl
Biological Pattern Formation on Two-Dimensional Spatial Domains: A Nonlinear Bifurcation Analysis.
SIAM J. Appl. Math.
Gerhard C. Cruywagen, James D. Murray, Philip K. Maini
1990 J jnl
Tracking bifurcating solutions of a model biological pattern generator.
IMPACT Comput. Sci. Eng.
K. H. Winters, Mary R. Myerscough, Philip K. Maini, James D. Murray