Petri Törönen

19 papers Journal 19
YearRankTypeTitle / Venue / Authors
2022 J jnl
Correction: Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences.
PLoS Comput. Biol.
Ilya Plyusnin, Liisa Holm, Petri Törönen
2021 J jnl
A New Approach to Multilabel Stratified Cross Validation with Application to Large and Sparse Gene Ontology Datasets.
CoRR
Henri Tiittanen, Liisa Holm, Petri Törönen
2019 J jnl
Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences.
PLoS Comput. Biol.
Ilya Plyusnin, Liisa Holm, Petri Törönen
2018 J jnl
AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination.
Nucleic Acids Res.
Alan Medlar, Petri Törönen, Liisa Holm
2018 J jnl
PANNZER2: a rapid functional annotation web server.
Nucleic Acids Res.
Petri Törönen, Alan Medlar, Liisa Holm
2016 J jnl
Robust multi-group gene set analysis with few replicates.
BMC Bioinform.
Pashupati P. Mishra, Alan Medlar, Liisa Holm, Petri Törönen
2015 J jnl
PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment.
Bioinform.
Patrik Koskinen, Petri Törönen, Jussi Nokso-Koivisto, Liisa Holm
2014 J jnl
Gene set analysis: limitations in popular existing methods and proposed improvements.
Bioinform.
Pashupati P. Mishra, Petri Törönen, Yrjö Leino, Liisa Holm
2013 J jnl
GOParGenPy: a high throughput method to generate Gene Ontology data matrices.
BMC Bioinform.
Ajay Kumar, Liisa Holm, Petri Törönen
2010 J jnl
Heuristic Bayesian Segmentation for Discovery of Coexpressed Genes within Genomic Regions.
IEEE ACM Trans. Comput. Biol. Bioinform.
Petri Pehkonen, Garry Wong, Petri Törönen
2009 J jnl
Generation of Gene Ontology benchmark datasets with various types of positive signal.
BMC Bioinform.
Petri Törönen, Petri Pehkonen, Liisa Holm
2009 J jnl
Interspliced transcription chimeras: Neglected pathological mechanism infiltrating gene accession queries?
J. Biomed. Informatics
Martti Tolvanen, Pauli J. Ojala, Petri Törönen, Heidi Anderson, Jukka Partanen, Hannu Turpeinen
2009 J jnl
Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function.
BMC Bioinform.
Petri Törönen, Pauli J. Ojala, Pekka Marttinen, Liisa Holm
2006 J jnl
Bayesian search of functionally divergent protein subgroups and their function specific residues.
Bioinform.
Pekka Marttinen, Jukka Corander, Petri Törönen, Liisa Holm
2006 J jnl
POXO: a web-enabled tool series to discover transcription factor binding sites.
Nucleic Acids Res.
Matti Kankainen, Petri Pehkonen, Päivi Rosenström, Petri Törönen, Garry Wong, Liisa Holm
2005 J jnl
Theme discovery from gene lists for identification and viewing of multiple functional groups.
BMC Bioinform.
Petri Pehkonen, Garry Wong, Petri Törönen
2004 J jnl
Selection of informative clusters from hierarchical cluster tree with gene classes.
BMC Bioinform.
Petri Törönen
2003 J jnl
Trustworthiness and metrics in visualizing similarity of gene expression.
BMC Bioinform.
Samuel Kaski, Janne Nikkilä, Merja Oja, Jarkko Venna, Petri Törönen, Eero Castrén
2002 J jnl
Analysis and visualization of gene expression data using Self-Organizing Maps.
Neural Networks
Janne Nikkilä, Petri Törönen, Samuel Kaski, Jarkko Venna, Eero Castrén, Garry Wong