Petras J. Kundrotas

13 papers Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2021 J jnl
Text mining for modeling of protein complexes enhanced by machine learning.
Bioinform.
Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser
2018 J jnl
Computational Feasibility of an Exhaustive Search of Side-Chain Conformations in Protein-Protein Docking.
J. Comput. Chem.
Taras Dauzhenka, Petras J. Kundrotas, Ilya A. Vakser
2018 J jnl
Inhibition of protein interactions: co-crystalized protein-protein interfaces are nearly as good as holo proteins in rigid-body ligand docking.
J. Comput. Aided Mol. Des.
Saveliy Belkin, Petras J. Kundrotas, Ilya A. Vakser
2018 J jnl
Natural language processing in text mining for structural modeling of protein complexes.
BMC Bioinform.
Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser
2016 — conf
Genome-Wide Structural Modeling of Protein-Protein Interactions.
ISBRA
Ivan V. Anishchenko, Varsha D. Badal, Taras Dauzhenka, Madhurima Das, Alexander V. Tuzikov, Petras J. Kundrotas, Ilya A. Vakser
2016 J jnl
Template-Based Modeling of Protein-RNA Interactions.
PLoS Comput. Biol.
Jinfang Zheng, Petras J. Kundrotas, Ilya A. Vakser, Shiyong Liu
2015 J jnl
Simulated unbound structures for benchmarking of protein docking in the Dockground resource.
BMC Bioinform.
Tatsiana Kirys, Anatoly M. Ruvinsky, Deepak Singla, Alexander V. Tuzikov, Petras J. Kundrotas, Ilya A. Vakser
2015 J jnl
Text Mining for Protein Docking.
PLoS Comput. Biol.
Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser
2010 J jnl
Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling.
PLoS Comput. Biol.
Petras J. Kundrotas, Ilya A. Vakser
2010 J jnl
GWIDD: Genome-wide protein docking database.
Nucleic Acids Res.
Petras J. Kundrotas, Zhengwei Zhu, Ilya A. Vakser
2007 J jnl
Assessing the Quality of the Homology-Modeled 3D Structures from electrostatic Standpoint: Test on bacterial nucleoside monophosphate kinase Families.
J. Bioinform. Comput. Biol.
Petras J. Kundrotas, Paulina Georgieva, Alexandra Shosheva, Petya Christova, Emil Alexov
2007 J jnl
PROTCOM: searchable database of protein complexes enhanced with domain-domain structures.
Nucleic Acids Res.
Petras J. Kundrotas, Emil Alexov
2006 J jnl
Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives.
BMC Bioinform.
Petras J. Kundrotas, Emil Alexov