Petr Skoda

45 papers A 1B 3C 7Journal 15Unranked 19
YearRankTypeTitle / Venue / Authors
2026 J jnl
From Knots to Knobs: Towards Steerable Collaborative Filtering Using Sparse Autoencoders.
CoRR
Martin Spisák, Ladislav Peska, Petr Skoda, Vojtech Vancura, Rodrigo Alves
2025 C conf
Data Specification Vocabulary (DSV): Representation of Application Profiles of Semantic Data Specifications.
iiWAS
Jakub Klímek, Stepán Stenchlák, Petr Skoda
2024 A conf
Enhancing Domain Modeling with Pre-trained Large Language Models: An Automated Assistant for Domain Modelers.
ER
Dominik Prokop, Stepán Stenchlák, Petr Skoda, Jakub Klímek, Martin Necaský
2024 J jnl
Semantic Web: Past, Present, and Future.
CoRR
Ansgar Scherp, Gerd Gröner, Petr Skoda, Katja Hose, Maria-Esther Vidal
2024 J jnl
Semantic Web: Past, Present, and Future.
TGDK
Ansgar Scherp, Gerd Gröner, Petr Skoda, Katja Hose, Maria-Esther Vidal
2024 — conf
Towards Authoring of Vocabularies and Application Profiles using Dataspecer.
ISWC (Posters/Demos/Industry)
Jakub Klímek, Stepán Stenchlák, Adam Polický, Petr Skoda, Martin Necaský
2023 — conf
Atlas: A Toolset for Efficient Model-Driven Data Exchange in Data Spaces.
MoDELS (Companion)
Jakub Klímek, Pavel Koupil, Petr Skoda, Jáchym Bártík, Stepán Stenchlák, Martin Necaský, Irena Holubová
2023 J jnl
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities.
CoRR
Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina Tamma
2023 J jnl
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities.
TGDK
Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina Tamma
2022 — conf
DataSpecer: A Model-Driven Approach to Managing Data Specifications.
ESWC (Satellite Events)
Stepán Stenchlák, Martin Necaský, Petr Skoda, Jakub Klímek
2022 J jnl
Modular framework for similarity-based dataset discovery using external knowledge.
Data Technol. Appl.
Martin Necaský, Petr Skoda, David Bernhauer, Jakub Klímek, Tomás Skopal
2022 J jnl
Open dataset discovery using context-enhanced similarity search.
Knowl. Inf. Syst.
David Bernhauer, Martin Necaský, Petr Skoda, Jakub Klímek, Tomás Skopal
2022 J jnl
PDBe-KB: collaboratively defining the biological context of structural data.
Nucleic Acids Res.
Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2022 J jnl
PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures.
Nucleic Acids Res.
David Jakubec, Petr Skoda, Radoslav Krivák, Marian Novotny, David Hoksza
2021 B conf
Similarity vs. Relevance: From Simple Searches to Complex Discovery.
SISAP
Tomás Skopal, David Bernhauer, Petr Skoda, Jakub Klímek, Martin Necaský
2020 C conf
Evaluation Framework for Search Methods Focused on Dataset Findability in Open Data Catalogs.
iiWAS
Petr Skoda, David Bernhauer, Martin Necaský, Jakub Klímek, Tomás Skopal
2020 C conf
Open IE-Triples Inference - Corpora Development and DNN Architectures.
FedCSIS
Martin Víta, Petr Skoda
2020 J jnl
PDBe-KB: a community-driven resource for structural and functional annotations.
Nucleic Acids Res.
Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2020 B conf
Visualizer of Dataset Similarity Using Knowledge Graph.
SISAP
Petr Skoda, Jakub Matejík, Tomás Skopal
2019 B conf
Explainable Similarity of Datasets Using Knowledge Graph.
SISAP
Petr Skoda, Jakub Klímek, Martin Necaský, Tomás Skopal
2019 J jnl
PrankWeb: a web server for ligand binding site prediction and visualization.
Nucleic Acids Res.
Lukás Jendele, Radoslav Krivák, Petr Skoda, Marian Novotny, David Hoksza
2019 J jnl
Survey of tools for Linked Data consumption.
Semantic Web
Jakub Klímek, Petr Skoda, Martin Necaský
2018 — conf
LinkedPipes DCAT-AP Viewer: A Native DCAT-AP Data Catalog.
ISWC (P&D/Industry/BlueSky)
Jakub Klímek, Petr Skoda
2018 — conf
Software framework for similarity-based prediction of protein interfaces.
BIBM
Jan Jelínek, Petr Skoda, David Hoksza
2018 J jnl
UnifiedViews: An ETL tool for RDF data management.
Semantic Web
Tomás Knap, Peter Hanecák, Jakub Klímek, Christian Mader, Martin Necaský, Bert Van Nuffelen, Petr Skoda
2017 — conf
Improving quality of ligand-binding site prediction with Bayesian optimization.
BIBM
Radoslav Krivák, David Hoksza, Petr Skoda
2017 C conf
LinkedPipes ETL in use: practical publication and consumption of linked data.
iiWAS
Jakub Klímek, Petr Skoda
2017 — conf
Platform for ligand-based virtual screening integration.
BIBM
Petr Skoda, David Hoksza, Jan Jelínek
2017 — conf
Practical Use Cases for Linked Open Data in eGovernment Demonstrated on the Czech Republic.
EGOVIS
Martin Necaský, Jakub Klímek, Petr Skoda
2017 — conf
Speeding up Publication of Linked Data Using Data Chunking in LinkedPipes ETL.
OTM Conferences (2)
Jakub Klímek, Petr Skoda
2017 J jnl
Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites.
BMC Bioinform.
Jan Jelínek, Petr Skoda, David Hoksza
2016 — conf
Benchmarking platform for ligand-based virtual screening.
BIBM
Petr Skoda, David Hoksza
2016 — conf
LinkedPipes ETL: Evolved Linked Data Preparation.
ESWC (Satellite Events)
Jakub Klímek, Petr Skoda, Martin Necaský
2016 — conf
Requirements on Linked Data Consumption Platform.
LDOW@WWW
Jakub Klímek, Petr Skoda, Martin Necaský
2016 — conf
Reusable transformations of Data Cube Vocabulary datasets from the fiscal domain.
SemStats@ISWC
Jindrich Mynarz, Jakub Klímek, Marek Dudás, Petr Skoda, Christiane Engels, Fathoni A. Musyaffa, Vojtech Svátek
2016 C conf
Using Bayesian modeling on molecular fragments features for virtual screening.
CIBCB
David Hoksza, Petr Skoda
2016 — conf
Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites.
ICCABS
Jan Jelínek, Petr Skoda, David Hoksza
2015 — conf
Exploration of topological torsion fingerprints.
BIBM
Petr Skoda, David Hoksza
2015 — conf
UnifiedViews: Towards ETL Tool for Simple yet Powerfull RDF Data Management.
DATESO
Tomás Knap, Petr Skoda, Jakub Klímek, Martin Necaský
2014 — conf
2D Pharmacophore Query Generation.
ISBRA
David Hoksza, Petr Skoda
2014 J jnl
Molpher: a software framework for systematic chemical space exploration.
J. Cheminformatics
David Hoksza, Petr Skoda, Milan Vorsilák, Daniel Svozil
2014 — conf
Scaffold-based chemical space exploration.
BIBM
David Hoksza, Petr Skoda
2014 — conf
UnifiedViews: An ETL Framework for Sustainable RDF Data Processing.
ESWC (Satellite Events)
Tomás Knap, Maria Kukhar, Bohuslav Machác, Petr Skoda, Jirí Tomes, Ján Vojt
2013 C conf
Chemical space visualization using ViFrame.
ICIS
Petr Skoda, David Hoksza
2009 C conf
Computability of Width of Submodular Partition Functions.
IWOCA
Petr Skoda