Petr Holub

57 papers A* 1B 6C 3Journal 25Unranked 22
YearRankTypeTitle / Venue / Authors
2026 J jnl
From slides to AI-ready maps: Standardized multi-layer tissue maps as metadata for artificial intelligence in digital pathology.
Artif. Intell. Medicine
Gernot Fiala, Markus Plass, Robert Harb, Peter Regitnig, Kristijan Skok, Wael Al Zoughbi, Carmen Zerner, Paul R. Torke, Michaela Kargl, Heimo Müller, Tomás Brázdil, Matej Gallo, Jaroslav Kubín, Roman Stoklasa, Rudolf Nenutil, Norman Zerbe, Andreas Holzinger, Petr Holub
2026 J jnl
LSP-DETR: Efficient and Scalable Nuclei Segmentation in Whole Slide Images.
CoRR
Matej Pekár, Vít Musil, Rudolf Nenutil, Petr Holub, Tomás Brázdil
2026 J jnl
Privacy-preserving data quality assessment for federated health data networks.
BMC Medical Informatics Decis. Mak.
Radovan Tomásik, Tobias Kussel, Zdenka Dudová, Radoslava Kacová, Roman Hrstka, Martin Lablans, Petr Holub
2025 J jnl
Definitions to data flow: Operationalizing MIABIS in HL7 FHIR.
J. Biomed. Informatics
Radovan Tomásik, Simon Konár, Niina Eklund, Cäcilia Engels, Zdenka Dudová, Radoslava Kacová, Roman Hrstka, Petr Holub
2025 J jnl
Evaluating Open-Weight Large Language Models for Structured Data Extraction from Narrative Medical Reports Across Multiple Use Cases and Languages.
CoRR
Douwe J. Spaanderman, Karthik Prathaban, Petr Zelina, Kaouther Mouheb, Lukás Hejtmánek, Matthew Marzetti, Antonius W. Schurink, Damian Chan, Ruben Niemantsverdriet, Frederik Hartmann, Zhen Qian, Maarten G. Thomeer, Petr Holub, Farhan Akram, Frank J. Wolters, Meike W. Vernooij, Cornelis Verhoef, Esther E. Bron, Vít Novácek, Dirk J. Grünhagen, Wiro J. Niessen, Martijn P. A. Starmans, Stefan Klein
2025 J jnl
Explaining Digital Pathology Models via Clustering Activations.
CoRR
Adam Bajger, Jan Obdrzálek, Vojtech Kur, Rudolf Nenutil, Petr Holub, Vít Musil, Tomás Brázdil
2025 J jnl
Standardized Multi-Layer Tissue Maps for Enhanced Artificial Intelligence Integration and Search in Large-Scale Whole Slide Image Archives.
CoRR
Gernot Fiala, Markus Plass, Robert Harb, Peter Regitnig, Kristijan Skok, Wael Al Zoughbi, Carmen Zerner, Paul R. Torke, Michaela Kargl, Heimo Müller, Tomás Brázdil, Matej Gallo, Jaroslav Kubín, Roman Stoklasa, Rudolf Nenutil, Norman Zerbe, Andreas Holzinger, Petr Holub
2024 J jnl
Sharing sensitive data in life sciences: an overview of centralized and federated approaches.
Briefings Bioinform.
Maria Alexandra Rujano, Jan-Willem Boiten, Christian Ohmann, Steve Canham, Sergio Contrino, Romain David, Jonathan Ewbank, Claudia Filippone, Claire Connellan, Ilse Custers, Rick van Nuland, Michaela Theresia Mayrhofer, Petr Holub, Eva García Álvarez, Emmanuel Bacry, Nigel Hughes, Mallory Ann Freeberg, Birgit Schaffhauser, Harald Wagener, Alex Sánchez-Pla, Guido Bertolini, Maria Panagiotopoulou
2023 J jnl
Proposal for a framework of contextual metadata in selected research infrastructures of the life sciences and the social sciences & humanities.
Int. J. Metadata Semant. Ontologies
Christian Ohmann, Maria Panagiotopoulou, Steve Canham, Petr Holub, Kurt Majcen, Gary Saunders, Maddalena Fratelli, Jing Tang, Philip Gribbon, Reagon Karki, Mari Kleemola, Katja Moilanen, Daan Broeder, Walter Daelemans, Pieter Fivez
2023 J jnl
Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness.
Data Sci. J.
Romain David, Audrey S. Richard, Claire Connellan, Katharina B. Lauer, Maria Luisa Chiusano, Carole A. Goble, Martin Houde, Isabel Kemmer, Antje Keppler, Philippe Lieutaud, Christian Ohmann, Maria Panagiotopoulou, Sara Raza Khan, Arina Rybina, Stian Soiland-Reyes, Charlotte Wit, Rudolf Wittner, Rafael Andrade Buono, Sarah Arnaud Marsh, Pauline Audergon, Dylan Bonfils, José María Carazo, Remi Charrel, Frederik Coppens, Wolfgang Fecke, Claudia Filippone, Eva García Álvarez, Sheraz Gul, Henning Hermjakob, Katja Herzog, Petr Holub, Lukasz Kozera, Allyson L. Lister, José López-Coronado, Bénédicte Madon, Kurt Majcen, William Martin, Wolfgang Müller, Elli Papadopoulou, Christine M. A. Prat, Paolo Romano, Susanna-Assunta Sansone, Gary Saunders, Niklas Blomberg, Jonathan Ewbank
2023 J jnl
xOpat: eXplainable Open Pathology Analysis Tool.
Comput. Graph. Forum
Jirí Horák, Katarína Furmanová, Barbora Kozlíková, Tomás Brázdil, Petr Holub, M. Kacenga, Matej Gallo, Rudolf Nenutil, Jan Byska, Vít Rusnák
2022 J jnl
EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data - a concept description.
CoRR
Jan-Willem Boiten, Christian Ohmann, Ayodeji Adeniran, Steve Canham, Mónica Cano Abadia, Gauthier Chassang, Maria Luisa Chiusano, Romain David, Maddalena Fratelli, Philip Gribbon, Petr Holub, Rebecca Ludwig, Michaela Theresia Mayrhofer, Mihaela Matei, Arshiya Merchant, Maria Panagiotopoulou, Luca Pireddu, Alex Sánchez-Pla, Irene Schlünder, George Tsamis, Harald Wagener
2022 — conf
The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes.
MIE
Francesca Frexia, Cecilia Mascia, Rudolf Wittner, Markus Plass, Heimo Müller, Jörg Geiger, Petr Holub
2021 — conf
ISO 23494: Biotechnology - Provenance Information Model for Biological Specimen And Data.
IPAW
Rudolf Wittner, Petr Holub, Heimo Müller, Jörg Geiger, Carole A. Goble, Stian Soiland-Reyes, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Elliot Fairweather, Jason R. Swedlow, Josh Moore, Caterina Strambio-De-Castillia, David Grunwald, Hiroki Nakae
2021 J jnl
Integration of Biobanks in National eHealth Ecosystems Facilitating Long-Term Longitudinal Clinical-Omics Studies and Citizens' Engagement in Research Through eHealthBioR.
Frontiers Digit. Health
Athos Antoniades, Maria Papaioannou, Apostolos Malatras, Gregory Papagregoriou, Heimo Müller, Petr Holub, Constantinos Deltas, Christos N. Schizas
2021 — conf
Non-repudiable Provenance for Clinical Decision Support Systems.
IPAW
Elliot Fairweather, Rudolf Wittner, Martin Chapman, Petr Holub, Vasa Curcin
2020 J jnl
Non-repudiable provenance for clinical decision support systems.
CoRR
Elliot Fairweather, Rudolf Wittner, Martin Chapman, Petr Holub, Vasa Curcin
2020 J jnl
State of FAIRness in ESFRI Projects.
Data Intell.
Peter Wittenburg, Franciska de Jong, Dieter Van Uytvanck, Massimo Cocco, Keith G. Jeffery, Michael Lautenschlager, Hannes Thiemann, Margareta Hellström, Ari Asmi, Petr Holub
2019 J jnl
Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC.
Appl. Clin. Inform.
Sebastian Mate, Marvin O. Kampf, Wolfgang Rödle, Stefan Kraus, Rumyana Proynova, Kaisa Silander, Lars Ebert, Martin Lablans, Christina Schüttler, Christian Knell, Niina Eklund, Michael Hummel, Petr Holub, Hans-Ulrich Prokosch
2019 — conf
Towards a reconstructive methodology for building a provenance metamodel that fits the complex bioinformatics pipelines.
RO
Isabelle Perseil, Petr Holub
2018 J jnl
Dynamic reconfiguration in multigroup multicast routing under uncertainty.
J. Heuristics
Pavel Troubil, Hana Rudová, Petr Holub
2017 — conf
A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples.
GMDS
Rumyana Proynova, Diogo Alexandre, Martin Lablans, David van Enckevort, Sebastian Mate, Niina Eklund, Kaisa Silander, Michael Hummel, Petr Holub, Frank Ückert
2017 J jnl
BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration.
Bioinform.
Chao Pang, Fleur D. L. Kelpin, David van Enckevort, Niina Eklund, Kaisa Silander, Dennis Hendriksen, Mark de Haan, Jonathan Jetten, Tommy de Boer, Bart Charbon, Petr Holub, Hans L. Hillege, Morris A. Swertz
2017 J jnl
Four simple recommendations to encourage best practices in research software.
F1000Research
Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutiérrez, Neil P. Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla J. García, Josep Lluís Gelpí, Simon L. Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán, Philippa C. Griffin, Björn A. Grüning, Jonas Hagberg, Petr Holub, Rob W. W. Hooft, Jon C. Ison, Daniel S. Katz, Brane Leskosek, Federico López-Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder, Yasset Pérez-Riverol, Robert Pergl, Horst Pichler, Bernard J. Pope, Ferran Sanz, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki, Radka Svobodová Vareková, Harry-Anton Talvik, Ilian T. Todorov, Andrew E. Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch
2016 J jnl
High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss.
Future Gener. Comput. Syst.
Milan Kabát, Vojtech David, Petr Holub, Martin Pulec
2016 J jnl
Toward natural multi-user interaction in advanced collaborative display environments.
Future Gener. Comput. Syst.
Vít Rusnák, Lukás Rucka, Petr Holub
2014 B conf
Local Search Heuristics for Media Streams Planning with Transcoding.
NCA
Jiri Marek, Hana Rudová, Petr Holub
2014 B conf
Media Streams Planning with Uncertain Link Capacities.
NCA
Pavel Troubil, Hana Rudová, Petr Holub
2013 J jnl
GPU-accelerated DXT and JPEG compression schemes for low-latency network transmissions of HD, 2K, and 4K video.
Future Gener. Comput. Syst.
Petr Holub, Martin Srom, Martin Pulec, Jiri Matela, Martin Jirman
2013 B conf
Local Search Heuristics for Media Streams Planning Problem.
AINA
Jiri Marek, Petr Holub, Hana Rudová
2013 B conf
Media Streams Planning with Transcoding.
NCA
Pavel Troubil, Hana Rudová, Petr Holub
2012 — conf
Exploring Collaboration in Group-to-Group Videoconferencing.
COOP
Petr Slovák, Peter Novák, Pavel Troubil, Vít Rusnák, Petr Holub, Erik C. Hofer
2012 — conf
Towards User-Aware Multi-touch Interaction Layer for Group Collaborative Systems.
MEMICS
Vít Rusnák, Lukás Rucka, Petr Holub
2012 A* conf
UltraGrid: low-latency high-quality video transmissions on commodity hardware.
ACM Multimedia
Petr Holub, Jiri Matela, Martin Pulec, Martin Srom
2011 J jnl
Data transfer planning with tree placement for collaborative environments.
Constraints An Int. J.
Petr Holub, Hana Rudová, Milos Liska
2011 B conf
Efficient JPEG2000 EBCOT Context Modeling for Massively Parallel Architectures.
DCC
Jiri Matela, Vít Rusnák, Petr Holub
2011 — conf
Exploring trust in group-to-group video-conferencing.
CHI Extended Abstracts
Petr Slovák, Peter Novák, Pavel Troubil, Petr Holub, Erik C. Hofer
2011 — conf
Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000.
MEMICS
Jiri Matela, Martin Srom, Petr Holub
2010 — conf
Design and implementation of a production dynamically configurable testbed.
TG
Kenny Welshons, Patrick Dorn, Andrei Hutanu, Petr Holub, John Vollbrecht, Gabrielle Allen
2010 — conf
GColl: enhancing trust in flexible group-to-group videoconferencing.
CHI Extended Abstracts
Petr Slovák, Pavel Troubil, Petr Holub
2010 — conf
GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000.
MEMICS
Jiri Matela, Vít Rusnák, Petr Holub
2009 — conf
CoUniverse: Framework for Building Self-Organizing Collaborative Environments Using Extreme-Bandwidth Media Applications.
ICN
Milos Liska, Petr Holub
2009 C conf
GColl group-to-group videoconferencing system: design and first experiences.
CollaborateCom
Petr Slovák, Pavel Troubil, Petr Holub
2009 — conf
GColl: A Flexible Videoconferencing Environment for Group-to-Group Interaction.
INTERACT (2)
Petr Slovák, Pavel Troubil, Petr Holub
2009 B conf
VirtCloud: Virtualising Network for Grid Environments.
AINA
David Antos, Ludek Matyska, Petr Holub, Jirí Sitera
2009 — conf
jSon: Network of Active Elements with Peer-to-Peer Control Plane.
ICN
Michal Procházka, Petr Holub, Eva Hladká
2008 — conf
CoUniverse: Framework for Building Self-organizing Collaborative Environments Using Extreme-Bandwidth Media Applications.
Euro-Par Workshops
Milos Liska, Petr Holub
2007 — conf
Secure and Pervasive Collaborative Platform for Medical Applications.
HealthGrid
Petr Holub, Eva Hladká, Michal Procházka, Milos Liska
2007 C conf
Transparent security for collaborative environments.
CollaborateCom
Eva Hladká, Daniel Kouril, Michal Procházka, Ludek Matyska, Petr Holub
2007 C conf
Uncompressed HD video for collaborative teaching - an experiment.
CollaborateCom
Andrei Hutanu, Ravi Paruchuri, Daniel Eiland, Milos Liska, Petr Holub, Steven R. Thorpe, Yufeng Xin
2006 — conf
Active Element Network with P2P Control Plane.
IWSOS/EuroNGI
Michal Procházka, Petr Holub, Eva Hladká
2006 J jnl
Distributed and collaborative visualization of large data sets using high-speed networks.
Future Gener. Comput. Syst.
Andrei Hutanu, Gabrielle Allen, Stephen David Beck, Petr Holub, Hartmut Kaiser, Archit Kulshrestha, Milos Liska, Jon MacLaren, Ludek Matyska, Ravi Paruchuri, Steffen Prohaska, Edward Seidel, Brygg Ullmer, Shalini Venkataraman
2006 J jnl
High-definition multimedia for multiparty low-latency interactive communication.
Future Gener. Comput. Syst.
Petr Holub, Ludek Matyska, Milos Liska, Lukás Hejtmánek, Jirí Denemark, Tomás Rebok, Andrei Hutanu, Ravi Paruchuri, Jan Radil, Eva Hladká
2005 — conf
Scalability and Robustness of Virtual Multicast for Synchronous Multimedia Distribution.
ICN (2)
Petr Holub, Eva Hladká, Ludek Matyska
2004 — conf
Distributed Encoding Environment based on Grids and IBP Infrastructure.
TERENA Networking Conference
Petr Holub, Lukás Hejtmánek
2004 — conf
Grid Infrastructure Monitoring as Reliable Information Service.
European Across Grids Conference
Petr Holub, Martin Kuba, Ludek Matyska, Miroslav Ruda
2004 — conf
User-Empowered Programmable Network Support for Collaborative Environment.
ECUMN
Eva Hladká, Petr Holub, Jirí Denemark