Peter Virnau

16 papers Journal 15
YearRankTypeTitle / Venue / Authors
2025 J jnl
Hybrid multiscale method for polymer melts: analysis and simulations.
CoRR
Ranajay Datta, Mária Lukácová-Medvidová, Andreas Schömer, Peter Virnau
2023 J jnl
Reconstructing diploid 3D chromatin structures from single cell Hi-C data with a polymer-based approach.
Frontiers Bioinform.
Jan Rothörl, Maarten A. Brems, Tim J. Stevens, Peter Virnau
2018 J jnl
KnotGenome: a server to analyze entanglements of chromosomes.
Nucleic Acids Res.
Joanna I. Sulkowska, Szymon Niewieczerzal, Aleksandra I. Jarmolinska, Jonathan T. Siebert, Peter Virnau, Wanda Niemyska
2018 J jnl
Molecular dynamics simulations in hybrid particle-continuum schemes: Pitfalls and caveats.
Comput. Phys. Commun.
S. Stalter, Leonid Yelash, N. Emamy, Antonia Statt, Martin Hanke, Mária Lukácová-Medvid'ová, Peter Virnau
2016 J jnl
A Monte Carlo Study of Knots in Long Double-Stranded DNA Chains.
PLoS Comput. Biol.
Florian C. Rieger, Peter Virnau
2014 J jnl
How molecular knots can pass through each other.
Proc. Natl. Acad. Sci. USA
Benjamin Trefz, Jonathan T. Siebert, Peter Virnau
2013 — ch.
Phase Separation of Colloid Polymer Mixtures Under Confinement.
High Performance Computing in Science and Engineering
Antonia Statt, Alexander Winkler, Peter Virnau, Kurt Binder
2011 J jnl
Monte Carlo simulations of a single polystyrene chain in spherical confinement.
Comput. Phys. Commun.
Daniel Reith, Peter Virnau
2011 J jnl
Monte Carlo simulations of the 2d-Ising model in the geometry of a long stripe.
Comput. Phys. Commun.
D. Wilms, Anke Winkler, Peter Virnau, Kurt Binder
2010 J jnl
A Stevedore's Protein Knot.
PLoS Comput. Biol.
Daniel Bölinger, Joanna I. Sulkowska, Hsiao-Ping Hsu, Leonid A. Mirny, Mehran Kardar, José N. Onuchic, Peter Virnau
2010 J jnl
Implementation and performance analysis of bridging Monte Carlo moves for off-lattice single chain polymers in globular states.
Comput. Phys. Commun.
Daniel Reith, Peter Virnau
2010 J jnl
Multi-GPU Accelerated Multi-Spin Monte Carlo Simulations of the 2D Ising Model
CoRR
Benjamin Block, Peter Virnau, Tobias Preis
2010 J jnl
Multi-GPU accelerated multi-spin Monte Carlo simulations of the 2D Ising model.
Comput. Phys. Commun.
Benjamin Block, Peter Virnau, Tobias Preis
2009 J jnl
GPU accelerated Monte Carlo simulation of the 2D and 3D Ising model.
J. Comput. Phys.
Tobias Preis, Peter Virnau, Wolfgang Paul, Johannes J. Schneider
2007 J jnl
Protein knot server: detection of knots in protein structures.
Nucleic Acids Res.
Grigory Kolesov, Peter Virnau, Mehran Kardar, Leonid A. Mirny
2006 J jnl
Intricate Knots in Proteins: Function and Evolution.
PLoS Comput. Biol.
Peter Virnau, Leonid A. Mirny, Mehran Kardar