Peter J. Thomas

75 papers B 6Misc 2Journal 58Unranked 9
YearRankTypeTitle / Venue / Authors
2026 J jnl
Brain-inspired energy efficient technologies for next-generation artificial intelligence.
Biol. Cybern.
Hillel J. Chiel, Jay S. Coggan, Gourav Datta, Jean-Marc Fellous, William R. P. Nourse, Roger D. Quinn, Peter J. Thomas
2025 J jnl
Artificial neural network solver for Fokker-Planck and Koopman eigenfunctions.
CoRR
Max Kreider, Peter J. Thomas, Yao Li
2025 J jnl
Beyond the Nobel prizes: towards new synergies between Computational Neuroscience and Artificial Intelligence.
Biol. Cybern.
Jean-Marc Fellous, Peter J. Thomas, Paul H. E. Tiesinga, Benjamin Lindner
2025 B conf
Capacity of a Class of Fully Observed Multistate Poisson-Type Signal Transduction Channels.
ISIT
Daniel T. Chen, Andrew W. Eckford, Peter J. Thomas
2025 J jnl
Obituary for Professor Jack D. Cowan.
Biol. Cybern.
Bard Ermentrout, Terrence J. Sejnowski, Peter J. Thomas, Hugh R. Wilson
2024 J jnl
COVID-19 and silent hypoxemia in a minimal closed-loop model of the respiratory rhythm generator.
Biol. Cybern.
Casey O. Diekman, Peter J. Thomas, Christopher G. Wilson
2024 — conf
Fitness Value of Subjective Information for Living Organisms.
NANOCOM
Tyler S. Barker, Peter J. Thomas, Alexander S. Moffett, Andrew W. Eckford, Massimiliano Pierobon
2024 J jnl
On the Relation between Infinitesimal Shape Response Curves and Phase-Amplitude Reduction for Single and Coupled Limit-Cycle Oscillators.
SIAM J. Appl. Dyn. Syst.
Max Kreider, Peter J. Thomas
2024 J jnl
Variational analysis of sensory feedback mechanisms in powerstroke-recovery systems.
Biol. Cybern.
Zhuojun Yu, Peter J. Thomas
2023 B conf
A Metric to Quantify Subjective Information in Biological Gradient Sensing.
GLOBECOM
Tyler Barker, Peter J. Thomas, Massimiliano Pierobon
2023 J jnl
Explicitly Solvable Continuous-time Inference for Partially Observed Markov Processes.
CoRR
Daniel Chen, Alexander G. Strang, Andrew W. Eckford, Peter J. Thomas
2023 J jnl
Sensitivity to Control Signals in Triphasic Rhythmic Neural Systems: A Comparative Mechanistic Analysis via Infinitesimal Local Timing Response Curves.
Neural Comput.
Zhuojun Yu, Jonathan E. Rubin, Peter J. Thomas
2023 J jnl
Tutorial: using NEURON for neuromechanical simulations.
Frontiers Comput. Neurosci.
Chris Fietkiewicz, Robert A. McDougal, David Corrales Marco, Hillel J. Chiel, Peter J. Thomas
2022 — conf
A Synthetic Nervous System with Coupled Oscillators Controls Peristaltic Locomotion.
Living Machines
Shane Riddle, William Nourse, Zhuojun Yu, Peter J. Thomas, Roger D. Quinn
2022 J jnl
Cheater suppression and stochastic clearance through quorum sensing.
PLoS Comput. Biol.
Alexander S. Moffett, Peter J. Thomas, Michael Hinczewski, Andrew W. Eckford
2022 J jnl
Explicitly Solvable Continuous-Time Inference for Partially Observed Markov Processes.
IEEE Trans. Signal Process.
Daniel Chen, Alexander G. Strang, Andrew W. Eckford, Peter J. Thomas
2022 J jnl
Guest Editorial Special Issue on "Edge-Based Wireless Communications Technologies to Counter Communicable Infectious Diseases".
IEEE J. Sel. Areas Commun.
Sasitharan Balasubramaniam, Robert Schober, Massimiliano Pierobon, Sudip Misra, Peter J. Thomas
2022 — conf
GymSlug: Deep Reinforcement Learning Toward Bio-inspired Control Based on Aplysia californica Feeding.
Living Machines
Wenhuan Sun, Mengdi Xu, Jeffrey P. Gill, Peter J. Thomas, Hillel J. Chiel, Victoria A. Webster-Wood
2022 J jnl
Mean-return-time phase of a stochastic oscillator provides an approximate renewal description for the associated point process.
Biol. Cybern.
Konstantin Holzhausen, Lukas Ramlow, Shusen Pu, Peter J. Thomas, Benjamin Lindner
2022 J jnl
Quantitative comparison of the mean-return-time phase and the stochastic asymptotic phase for noisy oscillators.
Biol. Cybern.
Alberto Pérez-Cervera, Benjamin Lindner, Peter J. Thomas
2022 J jnl
Stochastic oscillators in biology: introduction to the special issue.
Biol. Cybern.
James MacLaurin, Jean-Marc Fellous, Peter J. Thomas, Benjamin Lindner
2022 J jnl
Subjective Information and Survival in a Simulated Biological System.
Entropy
Tyler Barker, Massimiliano Pierobon, Peter J. Thomas
2022 J jnl
The Network HHD: Quantifying Cyclic Competition in Trait-Performance Models of Tournaments.
SIAM Rev.
Alexander Strang, Karen C. Abbott, Peter J. Thomas
2022 J jnl
Variational and phase response analysis for limit cycles with hard boundaries, with applications to neuromechanical control problems.
Biol. Cybern.
Yangyang Wang, Jeffrey P. Gill, Hillel J. Chiel, Peter J. Thomas
2021 J jnl
Biological Cybernetics: 60 years and more to come.
Biol. Cybern.
Benjamin Lindner, Peter J. Thomas, Jean-Marc Fellous, Paul H. E. Tiesinga
2021 J jnl
Correction to: Control for multifunctionality: bioinspired control based on feeding in Aplysia californica.
Biol. Cybern.
Victoria A. Webster-Wood, Jeffrey P. Gill, Peter J. Thomas, Hillel J. Chiel
2021 J jnl
Correction to: Resolving molecular contributions of ion channel noise to interspike interval variability through stochastic shielding.
Biol. Cybern.
Shusen Pu, Peter J. Thomas
2021 J jnl
Dynamical consequences of sensory feedback in a half-center oscillator coupled to a simple motor system.
Biol. Cybern.
Zhuojun Yu, Peter J. Thomas
2021 J jnl
Resolving molecular contributions of ion channel noise to interspike interval variability through stochastic shielding.
Biol. Cybern.
Shusen Pu, Peter J. Thomas
2021 J jnl
Shape versus Timing: Linear Responses of a Limit Cycle with Hard Boundaries under Instantaneous and Static Perturbation.
SIAM J. Appl. Dyn. Syst.
Yangyang Wang, Jeffrey P. Gill, Hillel J. Chiel, Peter J. Thomas
2021 — conf
Subjective Information in Life Processes: A Computational Case Study.
NANOCOM
Tyler Barker, Peter J. Thomas, Massimiliano Pierobon
2020 J jnl
A Partial Differential Equation for the Mean-Return-Time Phase of Planar Stochastic Oscillators.
SIAM J. Appl. Math.
Alexander Cao, Benjamin Lindner, Peter J. Thomas
2020 J jnl
A Renewed Vision for Biological Cybernetics.
Biol. Cybern.
Benjamin Lindner, Peter J. Thomas, Jean-Marc Fellous
2020 J jnl
Control for Multifunctionality: Bioinspired Control Based on Feeding in Aplysia californica.
CoRR
Victoria A. Webster-Wood, Jeffrey P. Gill, Peter J. Thomas, Hillel J. Chiel
2020 J jnl
Control for multifunctionality: bioinspired control based on feeding in Aplysia californica.
Biol. Cybern.
Victoria A. Webster-Wood, Jeffrey P. Gill, Peter J. Thomas, Hillel J. Chiel
2020 J jnl
Fast and Accurate Langevin Simulations of Stochastic Hodgkin-Huxley Dynamics.
CoRR
Shusen Pu, Peter J. Thomas
2020 J jnl
Fast and Accurate Langevin Simulations of Stochastic Hodgkin-Huxley Dynamics.
Neural Comput.
Shusen Pu, Peter J. Thomas
2020 J jnl
Resolving Molecular Contributions of Ion Channel Noise to Interspike Interval Variability through Stochastic Shielding.
CoRR
Shusen Pu, Peter J. Thomas
2020 — conf
Robotics Application of a Method for Analytically Computing Infinitesimal Phase Response Curves.
Living Machines
Marshaun N. Fitzpatrick, Yangyang Wang, Peter J. Thomas, Roger D. Quinn, Nicholas S. Szczecinski
2019 J jnl
A Partial Differential Equation for the Mean-Return-Time Phase of Planar Stochastic Oscillators.
CoRR
Alexander Cao, Benjamin Lindner, Peter J. Thomas
2019 J jnl
Control theory in biology and medicine - Introduction to the special issue.
Biol. Cybern.
Peter J. Thomas, Mette Sofie Olufsen, Rodolphe Sepulchre, Pablo A. Iglesias, Auke Jan Ijspeert, Manoj Srinivasan
2019 B conf
Linear Noise Approximation of Intensity-Driven Signal Transduction Channels.
GLOBECOM
Gregory R. Hessler, Andrew W. Eckford, Peter J. Thomas
2019 J jnl
Linear Noise Approximation of Intensity-Driven Signal Transduction Channels.
CoRR
Gregory R. Hessler, Andrew W. Eckford, Peter J. Thomas
2018 — conf
Experimental Validation of a Closed-Loop Respiratory Control Model using Dynamic Clamp.
EMBC
Casey O. Diekman, Peter J. Thomas, Christopher G. Wilson
2018 J jnl
Stochastic shielding and edge importance for Markov chains with timescale separation.
PLoS Comput. Biol.
Deena R. Schmidt, Roberto F. Galán, Peter J. Thomas
2018 J jnl
The Channel Capacity of Channelrhodopsin and Other Intensity-Driven Signal Transduction Receptors.
CoRR
Andrew W. Eckford, Peter J. Thomas
2018 J jnl
The Channel Capacity of Channelrhodopsin and Other Intensity-Driven Signal Transduction Receptors.
IEEE Trans. Mol. Biol. Multi Scale Commun.
Andrew W. Eckford, Peter J. Thomas
2018 B conf
Thermodynamic Properties of Molecular Communication.
ISIT
Andrew W. Eckford, Benjamin Kuznets-Speck, Michael Hinczewski, Peter J. Thomas
2018 J jnl
Thermodynamic Properties of Molecular Communication.
CoRR
Andrew W. Eckford, Benjamin Kuznets-Speck, Michael Hinczewski, Peter J. Thomas
2018 J jnl
Welcome from the new Editor(s)-in-Chief.
Biol. Cybern.
Benjamin Lindner, Peter J. Thomas, Jean-Marc Fellous
2017 J jnl
Robustness, flexibility, and sensitivity in a multifunctional motor control model.
Biol. Cybern.
David N. Lyttle, Jeffrey P. Gill, Kendrick M. Shaw, Peter J. Thomas, Hillel J. Chiel
2016 J jnl
Capacity of a Simple Intercellular Signal Transduction Channel.
IEEE Trans. Inf. Theory
Peter J. Thomas, Andrew W. Eckford
2016 J jnl
Entropy of the Sum of Two Independent, Non-Identically-Distributed Exponential Random Variables.
CoRR
Andrew W. Eckford, Peter J. Thomas
2016 J jnl
Finite-State Channel Models for Signal Transduction in Neural Systems.
CoRR
Andrew W. Eckford, Kenneth A. Loparo, Peter J. Thomas
2016 Misc conf
Finite-state channel models for signal transduction in neural systems.
ICASSP
Andrew W. Eckford, Kenneth A. Loparo, Peter J. Thomas
2016 J jnl
Guest Editorial Biological Applications of Information Theory in Honor of Claude Shannon's Centennial - Part 1.
IEEE Trans. Mol. Biol. Multi Scale Commun.
Alexander G. Dimitrov, Faramarz Fekri, Aurel A. Lazar, Stefan M. Moser, Peter J. Thomas
2016 J jnl
Guest Editorial Biological Applications of Information Theory in Honor of Claude Shannon's Centennial - Part II.
IEEE Trans. Mol. Biol. Multi Scale Commun.
Alexander G. Dimitrov, Faramarz Fekri, Aurel A. Lazar, Stefan M. Moser, Peter J. Thomas
2016 J jnl
Shannon Capacity of Signal Transduction for Multiple Independent Receptors.
CoRR
Peter J. Thomas, Andrew W. Eckford
2016 B conf
Shannon capacity of signal transduction for multiple independent receptors.
ISIT
Peter J. Thomas, Andrew W. Eckford
2015 J jnl
Commentary on Structured chaos shapes spike-response noise entropy in balanced neural networks, by Lajoie, Thivierge, and Shea-Brown.
Frontiers Comput. Neurosci.
Peter J. Thomas
2015 Misc conf
Information theory of intercellular signal transduction.
ACSSC
Andrew W. Eckford, Peter J. Thomas
2015 J jnl
Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics.
J. Comput. Neurosci.
David F. Anderson, Bard Ermentrout, Peter J. Thomas
2015 J jnl
The significance of dynamical architecture for adaptive responses to mechanical loads during rhythmic behavior.
J. Comput. Neurosci.
Kendrick M. Shaw, David N. Lyttle, Jeffrey P. Gill, Miranda J. Cullins, Jeffrey M. McManus, Hui Lu, Peter J. Thomas, Hillel J. Chiel
2013 J jnl
Capacity of a Simple Intercellular Signal Transduction Channel
CoRR
Andrew W. Eckford, Peter J. Thomas
2013 B conf
Capacity of a simple intercellular signal transduction channel.
ISIT
Andrew W. Eckford, Peter J. Thomas
2012 J jnl
Multiple Spike Time Patterns Occur at Bifurcation Points of Membrane Potential Dynamics.
PLoS Comput. Biol.
J. Vincent Toups, Jean-Marc Fellous, Peter J. Thomas, Terrence J. Sejnowski, Paul H. E. Tiesinga
2012 J jnl
Phase Resetting in an Asymptotically Phaseless System: On the Phase Response of Limit Cycles Verging on a Heteroclinic Orbit.
SIAM J. Appl. Dyn. Syst.
Kendrick M. Shaw, Youngmin Park, Hillel J. Chiel, Peter J. Thomas
2012 J jnl
Random local temporal structure of category fluency responses.
J. Comput. Neurosci.
David J. Meyer, Jason Messer, Tanya Singh, Peter J. Thomas, Wojbor A. Woyczynski, Jeffrey A. Kaye, Alan J. Lerner
2012 — conf
Spontaneous autoresuscitation in a model of respiratory control.
EMBC
Casey O. Diekman, Christopher G. Wilson, Peter J. Thomas
2011 J jnl
Finding the Event Structure of Neuronal Spike Trains.
Neural Comput.
J. Vincent Toups, Jean-Marc Fellous, Peter J. Thomas, Terrence J. Sejnowski, Paul H. E. Tiesinga
2010 J jnl
Information Maximization Fails to Maximize Expected Utility in a Simple Foraging Model
CoRR
Edward K. Agarwala, Hillel J. Chiel, Peter J. Thomas
2006 — conf
An Information Theoretic Framework for Eukaryotic Gradient Sensing.
NIPS
Joseph M. Kimmel, Richard M. Salter, Peter J. Thomas
2003 J jnl
Reliability and bifurcation in neurons driven by multiple sinusoids.
Neurocomputing
Peter J. Thomas, Paul H. E. Tiesinga, Jean-Marc Fellous, Terrence J. Sejnowski
2003 — conf
The Diffusion-Limited Biochemical Signal-Relay Channel.
NIPS
Peter J. Thomas, Donald J. Spencer, Sierra K. Hampton, Peter Park, Joseph P. Zurkus
2002 J jnl
What Geometric Visual Hallucinations Tell Us about the Visual Cortex.
Neural Comput.
Paul C. Bressloff, Jack D. Cowan, Martin Golubitsky, Peter J. Thomas, Matthew C. Wiener