Peter J. Castaldi

17 papers A* 5A 3Journal 9
YearRankTypeTitle / Venue / Authors
2025 J jnl
A generalized higher-order correlation analysis framework for multi-omics network inference.
PLoS Comput. Biol.
Weixuan Liu, Katherine A. Pratte, Peter J. Castaldi, Craig P. Hersh, Russell P. Bowler, Farnoush Banaei Kashani, Katerina J. Kechris
2024 J jnl
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals.
PLoS Comput. Biol.
Michele Gentili, Kimberly Glass, Enrico Maiorino, Brian D. Hobbs, Zhonghui Xu, Peter J. Castaldi, Michael H. Cho, Craig P. Hersh, Dandi Qiao, Jarrett D. Morrow, Vincent J. Carey, John Platig, Edwin K. Silverman
2023 J jnl
Explanations of Black-Box Models based on Directional Feature Interactions.
CoRR
Aria Masoomi, Davin Hill, Zhonghui Xu, Craig P. Hersh, Edwin K. Silverman, Peter J. Castaldi, Stratis Ioannidis, Jennifer G. Dy
2022 A* conf
Explanations of Black-Box Models based on Directional Feature Interactions.
ICLR
Aria Masoomi, Davin Hill, Zhonghui Xu, Craig P. Hersh, Edwin K. Silverman, Peter J. Castaldi, Stratis Ioannidis, Jennifer G. Dy
2021 J jnl
Improved prediction of smoking status via isoform-aware RNA-seq deep learning models.
PLoS Comput. Biol.
Zifeng Wang, Aria Masoomi, Zhonghui Xu, Adel Boueiz, Sool Lee, Tingting Zhao, Russell Bowler, Michael H. Cho, Edwin K. Silverman, Craig P. Hersh, Jennifer G. Dy, Peter J. Castaldi
2020 A* conf
Instance-wise Feature Grouping.
NeurIPS
Aria Masoomi, Chieh Wu, Tingting Zhao, Zifeng Wang, Peter J. Castaldi, Jennifer G. Dy
2019 J jnl
Unsupervised discovery of phenotype-specific multi-omics networks.
Bioinform.
W. Jenny Shi, Yonghua Zhuang, Pamela H. Russell, Brian D. Hobbs, Margaret M. Parker, Peter J. Castaldi, Pratyaydipta Rudra, Brian Vestal, Craig P. Hersh, Laura M. Saba, Katerina J. Kechris
2018 A conf
Crowdclustering with Partition Labels.
AISTATS
Junxiang Chen, Yale Chang, Peter J. Castaldi, Michael H. Cho, Brian D. Hobbs, Jennifer G. Dy
2017 J jnl
A Bayesian Nonparametric Model for Disease Subtyping: Application to Emphysema Phenotypes.
IEEE Trans. Medical Imaging
James C. Ross, Peter J. Castaldi, Michael H. Cho, Junxiang Chen, Yale Chang, Jennifer G. Dy, Edwin K. Silverman, George R. Washko, Raúl San José Estépar
2017 A conf
Clustering from Multiple Uncertain Experts.
AISTATS
Yale Chang, Junxiang Chen, Michael H. Cho, Peter J. Castaldi, Edwin K. Silverman, Jennifer G. Dy
2017 A conf
Clustering with Domain-Specific Usefulness Scores.
SDM
Yale Chang, Junxiang Chen, Michael H. Cho, Peter J. Castaldi, Edwin K. Silverman, Jennifer G. Dy
2017 A* conf
Multiple Clustering Views from Multiple Uncertain Experts.
ICML
Yale Chang, Junxiang Chen, Michael H. Cho, Peter J. Castaldi, Edwin K. Silverman, Jennifer G. Dy
2016 J jnl
Bipartite Community Structure of eQTLs.
PLoS Comput. Biol.
John Platig, Peter J. Castaldi, Dawn L. DeMeo, John Quackenbush
2016 A* conf
Interpretable Clustering via Discriminative Rectangle Mixture Model.
ICDM
Junxiang Chen, Yale Chang, Brian D. Hobbs, Peter J. Castaldi, Michael H. Cho, Edwin K. Silverman, Jennifer G. Dy
2014 J jnl
Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD.
BMC Syst. Biol.
Jen-hwa Chu, Craig P. Hersh, Peter J. Castaldi, Michael H. Cho, Benjamin A. Raby, Nan M. Laird, Russell Bowler, Stephen I. Rennard, Joseph Loscalzo, John Quackenbush, Edwin K. Silverman
2014 A* conf
Dual beta process priors for latent cluster discovery in chronic obstructive pulmonary disease.
KDD
James C. Ross, Peter J. Castaldi, Michael H. Cho, Jennifer G. Dy
2011 J jnl
An empirical assessment of validation practices for molecular classifiers.
Briefings Bioinform.
Peter J. Castaldi, Issa J. Dahabreh, John P. A. Ioannidis