Peter G. Wolynes

14 papers Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2022 J jnl
A generalized Flory-Stockmayer kinetic theory of connectivity percolation and rigidity percolation of cytoskeletal networks.
PLoS Comput. Biol.
Carlos Bueno, James Liman, Nicholas P. Schafer, Margaret S. Cheung, Peter G. Wolynes
2022 J jnl
A structural dynamics model for how CPEB3 binding to SUMO2 can regulate translational control in dendritic spines.
PLoS Comput. Biol.
Xinyu Gu, Nicholas P. Schafer, Carlos Bueno, Wei Lu, Peter G. Wolynes
2021 J jnl
FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations.
Bioinform.
Atilio O. Rausch, Maria I. Freiberger, Cesar O. Leonetti, Diego M. Luna, Leandro G. Radusky, Peter G. Wolynes, Diego U. Ferreiro, R. Gonzalo Parra
2021 J jnl
OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations.
PLoS Comput. Biol.
Wei Lu, Carlos Bueno, Nicholas P. Schafer, Joshua Moller, Shikai Jin, Xun Chen, Mingchen Chen, Xinyu Gu, Aram Davtyan, Juan J. de Pablo, Peter G. Wolynes
2021 J jnl
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome.
Nucleic Acids Res.
Vinícius G. Contessoto, Ryan R. Cheng, Arya Hajitaheri, Esteban Dodero-Rojas, Matheus F. Mello, Erez Lieberman Aiden, Peter G. Wolynes, Michele Di Pierro, José N. Onuchic
2020 J jnl
AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes.
Nucleic Acids Res.
Shikai Jin, Vinícius G. Contessoto, Mingchen Chen, Nicholas P. Schafer, Wei Lu, Xun Chen, Carlos Bueno, Arya Hajitaheri, Brian J. Sirovetz, Aram Davtyan, Garegin A. Papoian, Min-Yeh Tsai, Peter G. Wolynes
2016 J jnl
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics.
Nucleic Acids Res.
R. Gonzalo Parra, Nicholas P. Schafer, Leandro G. Radusky, Min-Yeh Tsai, A. Brenda Guzovsky, Peter G. Wolynes, Diego U. Ferreiro
2012 J jnl
Protein frustratometer: a tool to localize energetic frustration in protein molecules.
Nucleic Acids Res.
Michael Jenik, R. Gonzalo Parra, Leandro G. Radusky, Adrian Gustavo Turjanski, Peter G. Wolynes, Diego U. Ferreiro
2010 J jnl
The Energy Landscape, Folding Pathways and the Kinetics of a Knotted Protein.
PLoS Comput. Biol.
Michael C. Prentiss, David J. Wales, Peter G. Wolynes
2008 J jnl
The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures.
PLoS Comput. Biol.
Diego U. Ferreiro, Aleksandra M. Walczak, Elizabeth A. Komives, Peter G. Wolynes
2002 J jnl
Folding funnels: The key to robust protein structure prediction.
J. Comput. Chem.
Corey Hardin, Michael P. Eastwood, Michael C. Prentiss, Zaida Luthey-Schulten, Peter G. Wolynes
2001 J jnl
Evaluating protein structure-prediction schemes using energy landscape theory.
IBM J. Res. Dev.
Michael P. Eastwood, Corey Hardin, Zaida Luthey-Schulten, Peter G. Wolynes
1994 — conf
A Bayesian Approach to Sequence Alignment Algorithms for Protein Structure Recognition.
HICSS (5)
Richard A. Goldstein, Zaida Luthey-Schulten, Peter G. Wolynes
1992 J jnl
Classification and Prediction of Protein Side-Chains by Neural Network Techniques.
Int. J. Neural Syst.
J. Irwin, Henrik G. Bohr, K. Mochizuki, Peter G. Wolynes