Peter E. Midford

11 papers Journal 8Unranked 3
YearRankTypeTitle / Venue / Authors
2021 J jnl
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology.
Briefings Bioinform.
Peter D. Karp, Peter E. Midford, Richard Billington, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Wai Kit Ong, Pallavi Subhraveti, Ron Caspi, Carol A. Fulcher, Ingrid M. Keseler, Suzanne M. Paley
2020 J jnl
Taxonomic weighting improves the accuracy of a gap-filling algorithm for metabolic models.
Bioinform.
Wai Kit Ong, Peter E. Midford, Peter D. Karp
2020 J jnl
The MetaCyc database of metabolic pathways and enzymes - a 2019 update.
Nucleic Acids Res.
Ron Caspi, Richard Billington, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Peter E. Midford, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp
2019 J jnl
The BioCyc collection of microbial genomes and metabolic pathways.
Briefings Bioinform.
Peter D. Karp, Richard Billington, Ron Caspi, Carol A. Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M. Keseler, Markus Krummenacker, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti
2018 J jnl
The MetaCyc database of metabolic pathways and enzymes.
Nucleic Acids Res.
Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp
2013 J jnl
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.
BMC Bioinform.
Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena F. Deus, Brian Sidlauskas, Christian M. Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger A. Vos, Campbell O. Webb, Luke J. Harmon, Meg Pirrung, Brian C. O'Meara, Matthew W. Pennell, Siavash Mirarab, Michael S. Rosenberg, James P. Balhoff, Holly M. Bik, Tracy A. Heath, Peter E. Midford, Joseph W. Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E. Alfaro, Aaron Steele, Greg Jordan
2013 J jnl
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.
J. Biomed. Semant.
Peter E. Midford, Thomas Dececchi, James P. Balhoff, Wasila M. Dahdul, Nizar Ibrahim, Hilmar Lapp, John G. Lundberg, Paula M. Mabee, Paul C. Sereno, Monte Westerfield, Todd J. Vision, David C. Blackburn
2011 — conf
Employing Reasoning within the Phenoscape Knowledgebase.
ICBO
James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
2011 — conf
Integrating Anatomy and Phenotype Ontologies with Taxonomic Hierarchies.
ICBO
James P. Balhoff, Peter E. Midford, Hilmar Lapp
2011 — conf
Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes.
ICBO
Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
2004 J jnl
Ontologies for Behavior.
Bioinform.
Peter E. Midford