Peter Dittrich

89 papers A 1B 3C 5Journal 44Unranked 30
YearRankTypeTitle / Venue / Authors
2025 J jnl
Finding Pathways in Reaction Networks guided by Energy Barriers using Integer Linear Programming.
CoRR
Adittya Pal, Rolf Fagerberg, Jakob Lykke Andersen, Peter Dittrich, Daniel Merkle
2025 J jnl
Finding Thermodynamically Favorable Pathways in Chemical Reaction Networks Using Flows in Hypergraphs and Mixed-Integer Linear Programming.
J. Chem. Inf. Model.
Adittya Pal, Rolf Fagerberg, Jakob Lykke Andersen, Christoph Flamm, Peter Dittrich, Daniel Merkle
2024 J jnl
Finding Thermodynamically Favorable Pathways in Reaction Networks using Flows in Hypergraphs and Mixed Integer Linear Programming.
CoRR
Adittya Pal, Rolf Fagerberg, Jakob Lykke Andersen, Christoph Flamm, Peter Dittrich, Daniel Merkle
2021 J jnl
Linking Network Structure and Dynamics to Describe the Set of Persistent Species in Reaction Diffusion Systems.
SIAM J. Appl. Dyn. Syst.
Stephan Peter, Bashar Ibrahim, Peter Dittrich
2019 J jnl
Combining evolution and self-organization to find natural Boolean representations in unconventional computational media.
Biosyst.
Matthew D. Egbert, Gerd Gruenert, Bashar Ibrahim, Peter Dittrich
2018 J jnl
Organisation-Oriented Coarse Graining and Refinement of Stochastic Reaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Chunyan Mu, Peter Dittrich, David Parker, Jonathan E. Rowe
2018 J jnl
Towards measuring the semantic capacity of a physical medium demonstrated with elementary cellular automata.
Biosyst.
Peter Dittrich
2017 J jnl
Evolutionary Design of Classifiers Made of Droplets Containing a Nonlinear Chemical Medium.
Evol. Comput.
Konrad Gizynski, Gerd Gruenert, Peter Dittrich, Jerzy Gorecki
2016 J jnl
Compressing molecular dynamics trajectories: Breaking the one-bit-per-sample barrier.
J. Comput. Chem.
Jan Huwald, Stephan Richter, Bashar Ibrahim, Peter Dittrich
2016 J jnl
Compressing molecular dynamics trajectories: breaking the one-bit-per-sample barrier.
CoRR
Jan Huwald, Stephan Richter, Peter Dittrich
2016 — conf
Formal Quantitative Analysis of Reaction Networks Using Chemical Organisation Theory.
CMSB
Chunyan Mu, Peter Dittrich, David Parker, Jonathan E. Rowe
2015 J jnl
Editorial.
Artif. Life
Martyn Amos, Steen Rasmussen, John S. McCaskill, Peter Dittrich
2015 J jnl
Structural analysis of in silico mutant experiments of human inner-kinetochore structure.
Biosyst.
Richard Henze, Jan Huwald, Nelly Mostajo, Peter Dittrich, Bashar Ibrahim
2015 J jnl
Towards rule-based metabolic databases: a requirement analysis based on KEGG.
Int. J. Data Min. Bioinform.
Stephan Richter, Ingo Fetzer, Martin Thullner, Florian Centler, Peter Dittrich
2015 J jnl
Understanding Networks of Computing Chemical Droplet Neurons Based on Information Flow.
Int. J. Neural Syst.
Gerd Gruenert, Konrad Gizynski, Gabi Escuela, Bashar Ibrahim, Jerzy Gorecki, Peter Dittrich
2014 J jnl
Effects of small particle numbers on long-term behaviour in discrete biochemical systems.
Bioinform.
Peter Kreyssig, Christian Wozar, Stephan Peter, Tomas Veloz, Bashar Ibrahim, Peter Dittrich
2014 C conf
Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research.
DATA
Clemens Beckstein, Sebastian Böcker, Martin Bogdan, Helge Bruelheide, H. Martin Bücker, Joachim Denzler, Peter Dittrich, Ivo Grosse, Alexander Hinneburg, Birgitta König-Ries, Felicitas Löffler, Manja Marz, Matthias Müller-Hannemann, Martin Winter, Wolf Zimmermann
2014 J jnl
On logical universality of Belousov-Zhabotinsky vesicles.
Int. J. Gen. Syst.
Andrew Adamatzky, Benjamin de Lacy Costello, Peter Dittrich, Jerzy Gorecki, Klaus-Peter Zauner
2014 J jnl
Symbol representations and signal dynamics in evolving droplet computers.
Nat. Comput.
Gabi Escuela, Gerd Gruenert, Peter Dittrich
2013 J jnl
Multi-scale Modelling of Computers Made from Excitable Chemical Droplets.
Int. J. Unconv. Comput.
Gerd Gruenert, Jan Szymanski, Julian Holley, Gabi Escuela, Alexandra Diem, Bashar Ibrahim, Andrew Adamatzky, Jerzy Gorecki, Peter Dittrich
2013 J jnl
Structure, function, and behaviour of computational models in systems biology.
BMC Syst. Biol.
Christian Knüpfer, Clemens Beckstein, Peter Dittrich, Nicolas Le Novère
2013 — conf
Synthetic signalling protocell networks as models of neural computation.
ECAL
Matthew D. Egbert, Gerd Gruenert, Gabi Escuela, Peter Dittrich
2012 J jnl
On architectures of circuits implemented in simulated Belousov-Zhabotinsky droplets.
Biosyst.
Andrew Adamatzky, Julian Holley, Peter Dittrich, Jerzy Gorecki, Ben de Lacy Costello, Klaus-Peter Zauner, Larry Bull
2012 — conf
Symbol Representations in Evolving Droplet Computers.
UCNC
Gerd Gruenert, Gabi Escuela, Peter Dittrich
2011 — conf
A decomposition theorem in chemical organizations.
ECAL
Tomas Veloz, Bryan Reynaert, David Rojas-Camaggi, Peter Dittrich
2011 J jnl
Artificial Wet Neuronal Networks from Compartmentalised Excitable Chemical Media.
ERCIM News
Gerd Gruenert, Peter Dittrich, Klaus-Peter Zauner
2011 — conf
Biological and Chemical Information Technologies.
FET
Martyn Amos, Peter Dittrich, John S. McCaskill, Steen Rasmussen
2011 — ch.
Emergent Control.
Organic Computing
Peter Kreyssig, Peter Dittrich
2011 — ch.
On the Future of Chemistry-Inspired Computing.
Organic Computing
Peter Kreyssig, Peter Dittrich
2011 J jnl
On the Relation between Organizations and Limit Sets in Chemical Reaction Systems.
Adv. Complex Syst.
Stephan Peter, Peter Dittrich
2011 — ch.
Organisation-Oriented Chemical Programming.
Organic Computing
Naoki Matsumaru, Peter Kreyssig, Peter Dittrich
2011 — conf
Reaction flow artificial chemistries.
ECAL
Peter Kreyssig, Peter Dittrich
2010 J jnl
A parallel algorithm to compute chemical organizations in biological networks.
Bioinform.
Florian Centler, Christoph Kaleta, Pietro Speroni di Fenizio, Peter Dittrich
2010 — conf
Feasibility of Organizations - A Refinement of Chemical Organization Theory with Application to P Systems.
Int. Conf. on Membrane Computing
Stephan Peter, Tomas Veloz, Peter Dittrich
2010 — conf
Fragments and Chemical Organisations.
SASB
Peter Kreyssig, Peter Dittrich
2010 — conf
Modelling Modified Atmosphere Packaging for Fruits and Vegetables using Membrane Systems.
BIOSIGNALS
Gabi Escuela, Thomas Hinze, Peter Dittrich, Stefan Schuster, Mario Moreno-Álvarez
2010 C conf
On the Semantic Capacity of (Bio-)Chemical Systems.
ALIFE
Dennis Görlich, Peter Dittrich
2010 — conf
Organization Oriented Chemical Computing.
Int. Conf. on Membrane Computing
Peter Dittrich
2010 J jnl
Rule-based spatial modeling with diffusing, geometrically constrained molecules.
BMC Bioinform.
Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Maiko Lohel, Thomas Hinze, Peter Dittrich
2010 — conf
Using the SRSim Software for Spatial and Rule-Based Modeling of Combinatorially Complex Biochemical Reaction Systems.
Int. Conf. on Membrane Computing
Gerd Grünert, Peter Dittrich
2009 J jnl
A Topological Approach to Chemical Organizations.
Artif. Life
Gil Benkö, Florian Centler, Peter Dittrich, Christoph Flamm, Bärbel M. R. Stadler, Peter F. Stadler
2009 J jnl
Artificial Chemistry.
Artif. Life
Hideaki Suzuki, Peter Dittrich
2009 — ch.
ArtificialChemistry.
Encyclopedia of Complexity and Systems Science
Peter Dittrich
2009 J jnl
Developmental Robustness by Obligate Interaction of Class B Floral Homeotic Genes and Proteins.
PLoS Comput. Biol.
Thorsten Lenser, Günter Theißen, Peter Dittrich
2009 — conf
Flying over Mount Improbable.
ECAL (1)
Pietro Speroni di Fenizio, Naoki Matsumaru, Peter Dittrich
2009 — conf
Identifying Molecular Organic Codes in Reaction Networks.
ECAL (1)
Dennis Görlich, Peter Dittrich
2009 J jnl
In silico study of kinetochore control, amplification, and inhibition effects in MCC assembly.
Biosyst.
Bashar Ibrahim, Eberhard Schmitt, Peter Dittrich, Stephan Diekmann
2009 J jnl
Organization-Oriented Chemical Programming of Distributed Artifacts.
Int. J. Nanotechnol. Mol. Comput.
Naoki Matsumaru, Thomas Hinze, Peter Dittrich
2009 J jnl
Register Machine Computations on Binary Numbers by oscillating and Catalytic Chemical reactions Modelled Using Mass-Action kinetics.
Int. J. Found. Comput. Sci.
Thomas Hinze, Raffael Faßler, Thorsten Lenser, Peter Dittrich
2009 J jnl
Using chemical organization theory for model checking.
Bioinform.
Christoph Kaleta, Stephan Richter, Peter Dittrich
2008 — conf
08421 Working Group: Uncertainty and Trust.
Uncertainty Management in Information Systems
Hidir Aras, Clemens Beckstein, Sonja Buchegger, Peter Dittrich, Thomas Hubauer, Friederike Klan, Birgitta König-Ries, Ouri Wolfson
2008 — conf
Biosignal-Based Computing By AHL Induced Synthetic Gene Regulatory Networks - From an in vivo Flip-Flop Implementation to Programmable Computing Agents.
BIOSIGNALS (1)
Thomas Hinze, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich, Sikander Hayat
2008 J jnl
Chemical Organizations in a Toy Model of the Political System.
Adv. Complex Syst.
Peter Dittrich, Lars Winter
2008 C conf
Chemical organizations in living systems.
ALIFE
Peter Dittrich, Florian Centler, Christoph Kaleta, Naoki Matsumaru, Pietro Speroni di Fenizio
2008 J jnl
Computing chemical organizations in biological networks.
Bioinform.
Florian Centler, Christoph Kaleta, Pietro Speroni di Fenizio, Peter Dittrich
2008 — conf
Enhancing Parameter Estimation of Biochemical Networks by Exponentially Scaled Search Steps.
EvoBIO
Hendrik Rohn, Bashar Ibrahim, Thorsten Lenser, Thomas Hinze, Peter Dittrich
2008 — conf
Event-Driven Metamorphoses of P Systems.
Workshop on Membrane Computing
Thomas Hinze, Raffael Faßler, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich
2008 J jnl
Phenotype prediction in regulated metabolic networks.
BMC Syst. Biol.
Christoph Kaleta, Florian Centler, Pietro Speroni di Fenizio, Peter Dittrich
2008 C conf
Tracking the Evolution of Chemical Computing Networks.
ALIFE
Thorsten Lenser, Naoki Matsumaru, Thomas Hinze, Peter Dittrich
2007 J jnl
Chemical Organization Theory as a Theoretical Base for Chemical Computing.
Int. J. Unconv. Comput.
Naoki Matsumaru, Florian Centler, Pietro Speroni di Fenizio, Peter Dittrich
2007 — conf
Chemical Organizations at Different Spatial Scales.
ECAL
Pietro Speroni di Fenizio, Peter Dittrich
2007 J jnl
Designing a chemical program using chemical organization theory.
BMC Syst. Biol.
Naoki Matsumaru, Thorsten Lenser, Thomas Hinze, Peter Dittrich
2007 — conf
Hill Kinetics Meets P Systems: A Case Study on Gene Regulatory Networks as Computing Agents
Workshop on Membrane Computing
Thomas Hinze, Sikander Hayat, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich
2007 J jnl
How to formalise the meaning of a bio-model: a case study.
BMC Syst. Biol.
Christian Knüpfer, Clemens Beckstein, Peter Dittrich
2007 C conf
Organization-Oriented Chemical Programming.
HIS
Peter Dittrich, Naoki Matsumaru
2007 J jnl
Stochastic effects in a compartmental model for mitotic checkpoint regulation.
J. Integr. Bioinform.
Bashar Ibrahim, Peter Dittrich, Stephan Diekmann, Eberhard Schmitt
2007 — ch.
Toward Organization-Oriented Chemical Programming: A Case Study with the Maximal Independent Set Problem.
Advances in Biologically Inspired Information Systems
Naoki Matsumaru, Thorsten Lenser, Thomas Hinze, Peter Dittrich
2007 — conf
Towards Evolutionary Network Reconstruction Tools for Systems Biology.
EvoBIO
Thorsten Lenser, Thomas Hinze, Bashar Ibrahim, Peter Dittrich
2006 — conf
A Protein Substructure Based P System for Description and Analysis of Cell Signalling Networks.
Workshop on Membrane Computing
Thomas Hinze, Thorsten Lenser, Peter Dittrich
2006 J jnl
Chemical Organization Theory Applied to Virus Dynamics (Theorie chemischer Organisationen angewendet auf Infektionsmodelle).
it Inf. Technol.
Naoki Matsumaru, Florian Centler, Pietro Speroni di Fenizio, Peter Dittrich
2006 — conf
Organization-oriented chemical programming for the organic design of distributed computing systems.
BIONETICS
Naoki Matsumaru, Peter Dittrich
2006 B conf
SOGOS - A Distributed Meta Level Architecture for the Self-Organizing Grid of Services.
MDM
Clemens Beckstein, Peter Dittrich, Christian Erfurth, Dietmar Fey, Birgitta König-Ries, Martin Mundhenk, Harald Sack
2006 — conf
Towards a Semantic Description of Bio-Models: Meaning Facets - A Case Study.
SMBM
Christian Knüpfer, Clemens Beckstein, Peter Dittrich
2005 — conf
The Bio-Chemical Information Processing Metaphor as a Programming Paradigm for Organic Computing.
ARCS Workshops
Peter Dittrich
2004 — conf
Chemical Computing.
UPP
Peter Dittrich
2004 J jnl
Dynamic Subset Selection Based on a Fitness Case Topology.
Evol. Comput.
Christian Lasarczyk, Peter Dittrich, Wolfgang Banzhaf
2004 — conf
Self-Adaptive Scouting - Autonomous Experimentation for Systems Biology.
EvoWorkshops
Naoki Matsumaru, Florian Centler, Klaus-Peter Zauner, Peter Dittrich
2003 — ed.
Advances in Artificial Life, 7th European Conference, ECAL 2003, Dortmund, Germany, September 14-17, 2003, Proceedings
ECAL
Wolfgang Banzhaf, Thomas Christaller, Peter Dittrich, Jan T. Kim, Jens Ziegler
2003 — conf
Artificial Life as an Aid to Astrobiology: Testing Life Seeking Techniques.
ECAL
Florian Centler, Peter Dittrich, Lawrence Ku, Naoki Matsumaru, Jeffrey O. Pfaffmann, Klaus-Peter Zauner
2003 J jnl
On the Scalability of Social Order: Modeling the Problem of Double and Multi Contingency Following Luhmann.
J. Artif. Soc. Soc. Simul.
Peter Dittrich, Thomas Kron, Wolfgang Banzhaf
2001 J jnl
Artificial Chemistries-A Review.
Artif. Life
Peter Dittrich, Jens Ziegler, Wolfgang Banzhaf
2001 — conf
Spontaneous Formation of Proto-cells in an Universal Artificial Chemistry on a Planar Graph.
ECAL
Pietro Speroni di Fenizio, Peter Dittrich, Wolfgang Banzhaf
2001 — conf
Survival of the Unfittest? - The Seceder Model and Its Fitness Landscape.
ECAL
Peter Dittrich, Wolfgang Banzhaf
2000 J jnl
Künstliche Chemie.
Künstliche Intell.
Andre Skusa, Wolfgang Banzhaf, Jens Busch, Peter Dittrich, Jens Ziegler
1999 A conf
Dynamical Properties of the Fitness Landscape of a GP Controlled Random Morphology Robot.
GECCO
Peter Dittrich, Andre Skusa, Wolfgang Kantschik, Wolfgang Banzhaf
1999 B conf
Empirical analysis of different levels of meta-evolution.
CEC
Wolfgang Kantschik, Peter Dittrich, Markus Brameier, Wolfgang Banzhaf
1999 B conf
Meta-Evolution in Graph GP.
EuroGP
Wolfgang Kantschik, Peter Dittrich, Markus Brameier, Wolfgang Banzhaf
1998 — conf
Learning to Move a Robot with Random Morphology.
EvoRobot
Peter Dittrich, Andreas Bürgel, Wolfgang Banzhaf
1998 J jnl
Self-Evolution in a Constructive Binary String System.
Artif. Life
Peter Dittrich, Wolfgang Banzhaf