Peter D. Vize

19 papers Journal 16Unranked 3
YearRankTypeTitle / Venue / Authors
2022 J jnl
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms.
Nucleic Acids Res.
Bradley I. Arshinoff, Gregory A. Cary, Kamran Karimi, Saoirse Foley, Sergei Agalakov, Francisco Delgado, Vaneet S. Lotay, Carolyn Ku, Troy J. Pells, Thomas R. Beatman, Eugene Kim, R. Andrew Cameron, Peter D. Vize, Cheryl A. Telmer, Jenifer C. Croce, Charles A. Ettensohn, Veronica F. Hinman
2022 J jnl
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development.
BMC Bioinform.
Malcolm E. Fisher, Erik Segerdell, Nicolas Matentzoglu, Mardi J. Nenni, Joshua D. Fortriede, Stanley Chu, Troy J. Pells, David Osumi-Sutherland, Praneet Chaturvedi, Christina James-Zorn, Nivitha Sundararaj, Vaneet S. Lotay, Virgilio Ponferrada, Dong Zhuo Wang, Eugene Kim, Sergei Agalakov, Bradley I. Arshinoff, Kamran Karimi, Peter D. Vize, Aaron M. Zorn
2021 J jnl
Classifying domain-specific text documents containing ambiguous keywords.
Database J. Biol. Databases Curation
Kamran Karimi, Sergei Agalakov, Cheryl A. Telmer, Thomas R. Beatman, Troy J. Pells, Bradley I. M. Arshinoff, Carolyn Ku, Saoirse Foley, Veronica F. Hinman, Charles A. Ettensohn, Peter D. Vize
2021 J jnl
Integration of 1: 1 orthology maps and updated datasets into Echinobase.
Database J. Biol. Databases Curation
Saoirse Foley, Carolyn Ku, Brad Arshinoff, Vaneet Lotay, Kamran Karimi, Peter D. Vize, Veronica F. Hinman
2020 J jnl
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database.
Nucleic Acids Res.
Joshua D. Fortriede, Troy J. Pells, Stanley Chu, Praneet Chaturvedi, Dong Zhou Wang, Malcolm E. Fisher, Christina James-Zorn, Ying Wang, Mardi J. Nenni, Kevin A. Burns, Vaneet Lotay, Virgilio G. Ponferrada, Kamran Karimi, Aaron M. Zorn, Peter D. Vize
2018 — conf
Visualization of Gene Expression and Expression as a Phenotype with the XPO, XAO and DO using a Combination of Experimental Data Sources.
ICBO
Troy J. Pells, Malcolm E. Fisher, Erik Segerdell, Joshua D. Fortriede, Kevin A. Burns, Stanley Chu, Praneet Chaturvedi, Christina James-Zorn, Vaneet Lotay, Mardi J. Nenni, Virgilio G. Ponferrada, Dong Zhou Wang, Ying Wang, Kamran Karimi, Peter D. Vize, Aaron M. Zorn
2018 J jnl
Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Nucleic Acids Res.
Kamran Karimi, Joshua D. Fortriede, Vaneet Lotay, Kevin A. Burns, Dong Zhou Wang, Malcolm E. Fisher, Troy J. Pells, Christina James-Zorn, Ying Wang, Virgilio G. Ponferrada, Stanley Chu, Praneet Chaturvedi, Aaron M. Zorn, Peter D. Vize
2015 J jnl
Xenbase, the
Nucleic Acids Res.
J. Brad Karpinka, Joshua D. Fortriede, Kevin A. Burns, Christina James-Zorn, Virgilio G. Ponferrada, Jacqueline Lee, Kamran Karimi, Aaron M. Zorn, Peter D. Vize
2014 J jnl
Staging the Self-Assembly Process: Inspiration from Biological Development.
Artif. Life
Navneet Bhalla, Peter J. Bentley, Peter D. Vize, Christian Jacob
2014 J jnl
The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud.
Database J. Biol. Databases Curation
Kamran Karimi, Peter D. Vize
2013 J jnl
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.
J. Biomed. Semant.
Erik Segerdell, Virgilio G. Ponferrada, Christina James-Zorn, Kevin A. Burns, Joshua D. Fortriede, Wasila M. Dahdul, Peter D. Vize, Aaron M. Zorn
2013 J jnl
The Xenbase literature curation process.
Database J. Biol. Databases Curation
Jeff B. Bowes, Kevin A. Snyder, Christina James-Zorn, Virgilio G. Ponferrada, Chris Jarabek, Kevin A. Burns, Bishnu Bhattacharyya, Aaron M. Zorn, Peter D. Vize
2013 J jnl
Xenbase: expansion and updates of the
Nucleic Acids Res.
Christina James-Zorn, Virgilio G. Ponferrada, Chris Jarabek, Kevin A. Burns, Erik Segerdell, Jacqueline Lee, Kevin A. Snyder, Bishnu Bhattacharyya, J. Brad Karpinka, Joshua D. Fortriede, Jeff B. Bowes, Aaron M. Zorn, Peter D. Vize
2012 J jnl
Programming and evolving physical self-assembling systems in three dimensions.
Nat. Comput.
Navneet Bhalla, Peter J. Bentley, Peter D. Vize, Christian Jacob
2011 — conf
Staging the self-assembly process using morphological information.
ECAL
Navneet Bhalla, Peter J. Bentley, Peter D. Vize, Christian Jacob
2010 J jnl
Xenbase: gene expression and improved integration.
Nucleic Acids Res.
Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Chris Jarabek, Kenan Azam, Aaron M. Zorn, Peter D. Vize
2008 J jnl
Xenbase: a
Nucleic Acids Res.
Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Ross Gibb, Chris Jarabek, Etienne Noumen, Nicolas Pollet, Peter D. Vize
2005 J jnl
A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns.
Bioinform.
Victor E. Gerth, Peter D. Vize
2003 — conf
Interactive 3D gene expression viewer.
SIGGRAPH Web Graphics
Victor E. Gerth, Peter D. Vize