Peter D. Karp

110 papers A* 2A 10Misc 5Journal 81Unranked 11
YearRankTypeTitle / Venue / Authors
2024 J jnl
Visual analysis of multi-omics data.
Frontiers Bioinform.
Austin Swart, Ron Caspi, Suzanne M. Paley, Peter D. Karp
2022 J jnl
A roadmap for the functional annotation of protein families: a community perspective.
Database J. Biol. Databases Curation
Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia N. Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan J. Bridge, Stephen K. Burley, Stacey Cleveland, Lucy J. Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M. Gyori, Christopher S. Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D. Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria Jesus Martin, Claire D. McWhite, Gaurav D. Moghe, Paul Monaghan, Anne Morgat, Christopher J. Mungall, Darren A. Natale, William C. Nelson, Seán I. O'Donoghue, Christine A. Orengo, Katherine H. O'Toole, Predrag Radivojac, Colbie Reed, Richard J. Roberts, Dmitri Rodionov, Irina A. Rodionova, Jeffrey DePons, Lana Saleh, Gloria M. Sheynkman, Françoise Thibaud-Nissen, Paul D. Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter Weigele, Valerie Wood, Elisha M. Wood-Charlson, Jin Xu
2022 J jnl
Pathway Tools Management of Pathway/Genome Data for Microbial Communities.
Frontiers Bioinform.
Peter D. Karp, Suzanne M. Paley, Markus Krummenacker, Anamika Kothari, Michael J. Wannemuehler, Gregory J. Phillips
2022 J jnl
Reviewing knowledgebase and database grant proposals in the life sciences: the role of innovation.
Database J. Biol. Databases Curation
Peter D. Karp
2021 J jnl
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology.
Briefings Bioinform.
Peter D. Karp, Peter E. Midford, Richard Billington, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Wai Kit Ong, Pallavi Subhraveti, Ron Caspi, Carol A. Fulcher, Ingrid M. Keseler, Suzanne M. Paley
2021 J jnl
The BioCyc Metabolic Network Explorer.
BMC Bioinform.
Suzanne M. Paley, Peter D. Karp
2020 J jnl
Taxonomic weighting improves the accuracy of a gap-filling algorithm for metabolic models.
Bioinform.
Wai Kit Ong, Peter E. Midford, Peter D. Karp
2020 J jnl
The MetaCyc database of metabolic pathways and enzymes - a 2019 update.
Nucleic Acids Res.
Ron Caspi, Richard Billington, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Peter E. Midford, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp
2019 J jnl
The BioCyc collection of microbial genomes and metabolic pathways.
Briefings Bioinform.
Peter D. Karp, Richard Billington, Ron Caspi, Carol A. Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M. Keseler, Markus Krummenacker, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti
2019 J jnl
The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database.
BMC Bioinform.
Suzanne M. Paley, Peter D. Karp
2018 J jnl
Evaluation of reaction gap-filling accuracy by randomization.
BMC Bioinform.
Mario Latendresse, Peter D. Karp
2018 J jnl
How accurate is automated gap filling of metabolic models?
BMC Syst. Biol.
Peter D. Karp, Daniel S. Weaver, Mario Latendresse
2018 J jnl
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications.
Briefings Bioinform.
Bohdan B. Khomtchouk, Edmund Weitz, Peter D. Karp, Claes Wahlestedt
2018 J jnl
The MetaCyc database of metabolic pathways and enzymes.
Nucleic Acids Res.
Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp
2017 J jnl
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications.
Briefings Bioinform.
Bohdan B. Khomtchouk, Edmund Weitz, Peter D. Karp, Claes Wahlestedt
2017 J jnl
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
Nucleic Acids Res.
Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez, Ron Caspi, Carol A. Fulcher, Socorro Gama-Castro, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Martín Peralta-Gil, Pallavi Subhraveti, David A. Velázquez-Ramírez, Daniel S. Weaver, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp
2017 J jnl
Update notifications for the BioCyc collection of databases.
Database J. Biol. Databases Curation
Suzanne M. Paley, Peter D. Karp
2016 J jnl
Crowd-sourcing and author submission as alternatives to professional curation
Database J. Biol. Databases Curation
Peter D. Karp
2016 J jnl
Crowd-sourcing and author submission as alternatives to professional curation.
Database J. Biol. Databases Curation
Peter D. Karp
2016 J jnl
How much does curation cost?
Database J. Biol. Databases Curation
Peter D. Karp
2016 J jnl
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology.
Briefings Bioinform.
Peter D. Karp, Mario Latendresse, Suzanne M. Paley, Markus Krummenacker, Quang Ong, Richard Billington, Anamika Kothari, Daniel S. Weaver, Thomas J. Lee, Pallavi Subhraveti, Aaron Spaulding, Carol A. Fulcher, Ingrid M. Keseler, Ron Caspi
2016 J jnl
Pathway collages: personalized multi-pathway diagrams.
BMC Bioinform.
Suzanne M. Paley, Paul E. O'Maille, Daniel S. Weaver, Peter D. Karp
2016 J jnl
Representation and inference of cellular architecture for metabolic reconstruction and modeling.
Bioinform.
Suzanne M. Paley, Markus Krummenacker, Peter D. Karp
2016 J jnl
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Res.
Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Peter D. Karp
2015 J jnl
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.
PLoS Comput. Biol.
Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
2015 J jnl
Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.
Bioinform.
Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
2014 J jnl
A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.
BMC Syst. Biol.
Daniel S. Weaver, Ingrid M. Keseler, Amanda Mackie, Ian T. Paulsen, Peter D. Karp
2014 J jnl
Curation accuracy of model organism databases.
Database J. Biol. Databases Curation
Ingrid M. Keseler, Marek S. Skrzypek, Deepika Weerasinghe, Albert Y. Chen, Carol A. Fulcher, Gene-Wei Li, Kimberly C. Lemmer, Katherine M. Mladinich, Edmond D. Chow, Gavin Sherlock, Peter D. Karp
2014 J jnl
Optimal metabolic route search based on atom mappings.
Bioinform.
Mario Latendresse, Markus Krummenacker, Peter D. Karp
2014 J jnl
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.
Nucleic Acids Res.
James C. Hu, Gavin Sherlock, Deborah A. Siegele, Suzanne A. Aleksander, Catherine A. Ball, Janos Demeter, Sushanth Gouni, Timothy A. Holland, Peter D. Karp, John E. Lewis, Nathan M. Liles, Brenley K. McIntosh, Huaiyu Mi, Anushya Muruganujan, Farrell Wymore, Paul D. Thomas
2014 J jnl
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Nucleic Acids Res.
Ron Caspi, Tomer Altman, Richard Billington, Kate Dreher, Hartmut Foerster, Carol A. Fulcher, Timothy A. Holland, Ingrid M. Keseler, Anamika Kothari, Aya Kubo, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp
2013 J jnl
A systematic comparison of the MetaCyc and KEGG pathway databases.
BMC Bioinform.
Tomer Altman, Michael Travers, Anamika Kothari, Ron Caspi, Peter D. Karp
2013 J jnl
Computing minimal nutrient sets from metabolic networks via linear constraint solving.
BMC Bioinform.
Steven Eker, Markus Krummenacker, Alexander Glennon Shearer, Ashish Tiwari, Ingrid M. Keseler, Carolyn L. Talcott, Peter D. Karp
2013 J jnl
EcoCyc: fusing model organism databases with systems biology.
Nucleic Acids Res.
Ingrid M. Keseler, Amanda Mackie, Martín Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama-Castro, César Bonavides-Martínez, Carol A. Fulcher, Araceli M. Huerta, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Imke Schröder, Alexander Glennon Shearer, Pallavi Subhraveti, Michael Travers, Deepika Weerasinghe, Verena Weiss, Julio Collado-Vides, Robert P. Gunsalus, Ian T. Paulsen, Peter D. Karp
2013 J jnl
Groups: knowledge spreadsheets for symbolic biocomputing.
Database J. Biol. Databases Curation
Michael Travers, Suzanne M. Paley, Jeff Shrager, Timothy A. Holland, Peter D. Karp
2012 J jnl
Accurate Atom-Mapping Computation for Biochemical Reactions.
J. Chem. Inf. Model.
Mario Latendresse, Jeremiah P. Malerich, Mike Travers, Peter D. Karp
2012 J jnl
Construction and completion of flux balance models from pathway databases.
Bioinform.
Mario Latendresse, Markus Krummenacker, Miles Trupp, Peter D. Karp
2012 J jnl
Regulatory network operations in the Pathway Tools software.
BMC Bioinform.
Suzanne M. Paley, Mario Latendresse, Peter D. Karp
2012 J jnl
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Res.
Ron Caspi, Tomer Altman, Kate Dreher, Carol A. Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Anuradha Pujar, Alexander Glennon Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp
2011 J jnl
Discovering novel subsystems using comparative genomics.
Bioinform.
Luciana Ferrer, Alexander Glennon Shearer, Peter D. Karp
2011 J jnl
EcoCyc: a comprehensive database of
Nucleic Acids Res.
Ingrid M. Keseler, Julio Collado-Vides, Alberto Santos-Zavaleta, Martín Peralta-Gil, Socorro Gama-Castro, Luis Muñiz-Rascado, César Bonavides-Martínez, Suzanne M. Paley, Markus Krummenacker, Tomer Altman, Pallavi Kaipa, Aaron Spaulding, John Pacheco, Mario Latendresse, Carol A. Fulcher, Malabika Sarker, Alexander Glennon Shearer, Amanda Mackie, Ian T. Paulsen, Robert P. Gunsalus, Peter D. Karp
2011 — conf
Using cellular network diagrams to interpret large-scale datasets: past progress and future challenges.
Human Vision and Electronic Imaging
Peter D. Karp, Mario Latendresse, Suzanne M. Paley
2011 J jnl
Web-Based Metabolic Network Visualization with a Zooming User Interface.
BMC Bioinform.
Mario Latendresse, Peter D. Karp
2010 J jnl
A systematic study of genome context methods: calibration, normalization and combination.
BMC Bioinform.
Luciana Ferrer, Joseph M. Dale, Peter D. Karp
2010 J jnl
An advanced web query interface for biological databases.
Database J. Biol. Databases Curation
Mario Latendresse, Peter D. Karp
2010 — conf
Databases and Algorithms for Pathway Bioinformatics.
BIOSTEC
Peter D. Karp
2010 — conf
Development of Large Scientific Knowledge Bases.
ICAART (1)
Peter D. Karp
2010 J jnl
Machine learning methods for metabolic pathway prediction.
BMC Bioinform.
Joseph M. Dale, Liviu Popescu, Peter D. Karp
2010 J jnl
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.
Briefings Bioinform.
Peter D. Karp, Suzanne M. Paley, Markus Krummenacker, Mario Latendresse, Joseph M. Dale, Thomas J. Lee, Pallavi Kaipa, Fred Gilham, Aaron Spaulding, Liviu Popescu, Tomer Altman, Ian T. Paulsen, Ingrid M. Keseler, Ron Caspi
2010 J jnl
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Nucleic Acids Res.
Ron Caspi, Tomer Altman, Joseph M. Dale, Kate Dreher, Carol A. Fulcher, Fred Gilham, Pallavi Kaipa, Athikkattuvalasu S. Karthikeyan, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Suzanne M. Paley, Liviu Popescu, Anuradha Pujar, Alexander Glennon Shearer, Peifen Zhang, Peter D. Karp
2009 J jnl
EcoCyc: A comprehensive view of
Nucleic Acids Res.
Ingrid M. Keseler, César Bonavides-Martínez, Julio Collado-Vides, Socorro Gama-Castro, Robert P. Gunsalus, D. Aaron Johnson, Markus Krummenacker, Laura M. Nolan, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Alberto D. Santos-Zavaleta, Alexander Glennon Shearer, Peter D. Karp
2008 A conf
Annotation-based inference of transporter function.
ISMB
Thomas J. Lee, Ian T. Paulsen, Peter D. Karp
2008 — conf
BioWarehouse: Relational Integration of Eleven Bioinformatics Databases and Formats.
DILS
Peter D. Karp, Thomas J. Lee, Valerie Wagner
2008 J jnl
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Nucleic Acids Res.
Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Pallavi Kaipa, Markus Krummenacker, Mario Latendresse, Suzanne M. Paley, Seung Yon Rhee, Alexander Glennon Shearer, Christophe Tissier, Thomas C. Walk, Peifen Zhang, Peter D. Karp
2007 J jnl
A survey of orphan enzyme activities.
BMC Bioinform.
Yannick Pouliot, Peter D. Karp
2007 — conf
Using genome-context data to identify specific types of functional associations in pathway/genome databases.
ISMB/ECCB (Supplement of Bioinformatics)
Michelle L. Green, Peter D. Karp
2006 J jnl
BioWarehouse: a bioinformatics database warehouse toolkit.
BMC Bioinform.
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Priyanka Gupta, David W. J. Stringer-Calvert, Jessica D. Tenenbaum, Peter D. Karp
2006 J jnl
MetaCyc: a multiorganism database of metabolic pathways and enzymes.
Nucleic Acids Res.
Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Rebecca Hopkinson, John Ingraham, Pallavi Kaipa, Markus Krummenacker, Suzanne M. Paley, John Pick, Seung Yon Rhee, Christophe Tissier, Peifen Zhang, Peter D. Karp
2006 J jnl
The comprehensive updated regulatory network of
BMC Bioinform.
Heladia Salgado, Alberto Santos-Zavaleta, Socorro Gama-Castro, Martín Peralta-Gil, Mónica I. Peñaloza-Spínola, Agustino Martínez-Antonio, Peter D. Karp, Julio Collado-Vides
2005 J jnl
EcoCyc: a comprehensive database resource for
Nucleic Acids Res.
Ingrid M. Keseler, Julio Collado-Vides, Socorro Gama-Castro, John Ingraham, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Peter D. Karp
2005 J jnl
Querying and computing with BioCyc databases.
Bioinform.
Markus Krummenacker, Suzanne M. Paley, Lukas A. Mueller, Thomas Yan, Peter D. Karp
2004 J jnl
A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.
BMC Bioinform.
Michelle L. Green, Peter D. Karp
2004 Misc conf
An Evidence Ontology for Use in Pathway/Genome Databases.
Pacific Symposium on Biocomputing
Peter D. Karp, Suzanne M. Paley, Cynthia J. Krieger, Peifen Zhang
2004 J jnl
MetaCyc: a multiorganism database of metabolic pathways and enzymes.
Nucleic Acids Res.
Cynthia J. Krieger, Peifen Zhang, Lukas A. Mueller, Alfred Wang, Suzanne M. Paley, Martha Arnaud, John Pick, Seung Yon Rhee, Peter D. Karp
2004 J jnl
Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases.
Bioinform.
Pedro Romero, Peter D. Karp
2003 Misc conf
Genome, Pathway, and Interaction Bioinformatics - Session Introduction.
Pacific Symposium on Biocomputing
Peter D. Karp, Eric P. Neumann, Alexander J. Hartemink, Pedro Romero
2003 J jnl
Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).
Bioinform.
Iwei Yeh, Peter D. Karp, Natalya Fridman Noy, Russ B. Altman
2003 — conf
Pathway Bioinformatics.
CSB
Peter D. Karp
2003 J jnl
What Database Management System(s) Should Be Employed in Bioinformatics Applications?
OMICS
Peter D. Karp
2002 J jnl
Evaluation of computational metabolic-pathway predictions for Helicobacter pylori.
Bioinform.
Suzanne M. Paley, Peter D. Karp
2002 Misc conf
Genome, Pathway and Interaction Bioinformatics - Session Introduction.
Pacific Symposium on Biocomputing
Peter D. Karp, Pedro Romero, Eric P. Neumann
2002 J jnl
The EcoCyc Database.
Nucleic Acids Res.
Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Julio Collado-Vides, Suzanne M. Paley, Alida Pellegrini-Toole, César Bonavides-Martínez, Socorro Gama-Castro
2002 J jnl
The MetaCyc Database.
Nucleic Acids Res.
Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole
2002 A conf
The Pathway Tools software.
ISMB
Peter D. Karp, Suzanne M. Paley, Pedro Romero
2001 J jnl
Database verification studies of SWISS-PROT and GenBank.
Bioinform.
Peter D. Karp, Suzanne M. Paley, Jingchun Zhu
2001 Misc conf
Genome, Pathway and Interaction Bioinformatics - Session Introduction.
Pacific Symposium on Biocomputing
Peter D. Karp, Eric P. Neumann, Pedro Romero
2001 Misc conf
Nutrition-Related Analysis of Pathway/Genome Databases.
Pacific Symposium on Biocomputing
Pedro Romero, Peter D. Karp
2000 A conf
An Evaluation of Ontology Exchange Languages for Bioinformatics.
ISMB
Robin McEntire, Peter D. Karp, Neil F. Abernethy, David Benton, Gregg Helt, Matt DeJongh, Robert Kent, Anthony Kosky, Suzanna Lewis, Dan Hodnett, Eric P. Neumann, Frank Olken, Dhiraj K. Pathak, Peter Tarczy-Hornoch, Luca Toldo, Thodoros Topaloglou
2000 J jnl
An ontology for biological function based on molecular interactions.
Bioinform.
Peter D. Karp
2000 J jnl
The EcoCyc and MetaCyc databases.
Nucleic Acids Res.
Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Suzanne M. Paley, Alida Pellegrini-Toole
1999 J jnl
A Collaborative Environment for Authoring Large Knowledge Bases.
J. Intell. Inf. Syst.
Peter D. Karp, Vinay K. Chaudhri, Suzanne M. Paley
1999 J jnl
Eco Cyc: encyclopedia of Escherichia coli genes and metabolism.
Nucleic Acids Res.
Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole, Markus Krummenacker
1998 J jnl
EcoCyc: Encyclopedia of Escherichia coli genes and metabolism.
Nucleic Acids Res.
Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole, Markus Krummenacker
1998 — conf
OKBC: A Programmatic Foundation for Knowledge Base Interoperability.
AAAI/IAAI
Vinay K. Chaudhri, Adam Farquhar, Richard Fikes, Peter D. Karp, James Rice
1998 J jnl
What we do not know about sequence analysis and sequence databases.
Bioinform.
Peter D. Karp
1997 — conf
A Generic Knowledge-Base Browser and Editor.
AAAI/IAAI
Suzanne M. Paley, John D. Lowrance, Peter D. Karp
1997 J jnl
EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism.
Nucleic Acids Res.
Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole, Markus Krummenacker
1997 J jnl
Estimation of equilibrium constants using automated group contribution methods.
Comput. Appl. Biosci.
Ronald G. Forsythe Jr., Peter D. Karp, Michael L. Mavrovouniotis
1997 A conf
Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity.
ISMB
Marie desJardins, Peter D. Karp, Markus Krummenacker, Thomas J. Lee, Christos A. Ouzounis
1997 A ed.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997
ISMB
Terry Gaasterland, Peter D. Karp, Kevin Karplus, Christos A. Ouzounis, Chris Sander, Alfonso Valencia
1997 — conf
Querying Schema Information.
KRDB
Vinay K. Chaudhri, Peter D. Karp
1996 J jnl
EcoCyc: an encyclopedia of Escherichia coli genes and metabolism.
Nucleic Acids Res.
Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole
1996 A conf
HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae.
ISMB
Peter D. Karp, Christos A. Ouzounis, Suzanne M. Paley
1996 J jnl
Integrated Access to Metabolic and Genomic Data.
J. Comput. Biol.
Peter D. Karp, Suzanne M. Paley
1996 — conf
Three Models of Gene Regulation in E.coli.
German Conference on Bioinformatics
Araceli M. Huerta, Julio Collado-Vides, Peter D. Karp, Kathleen Klose
1995 J jnl
A Strategy for Database Interoperation.
J. Comput. Biol.
Peter D. Karp
1995 A* conf
Knowledge Representation in the Large.
IJCAI (1)
Peter D. Karp, Suzanne M. Paley
1995 A* conf
The Generic Frame Protocol.
IJCAI (1)
Peter D. Karp, Karen L. Myers, Thomas R. Gruber
1994 A conf
A Storage System for Scalable Knowledge Representation.
CIKM
Peter D. Karp, Suzanne M. Paley, Ira B. Greenberg
1994 A ed.
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA
ISMB
Russ B. Altman, Douglas L. Brutlag, Peter D. Karp, Richard H. Lathrop, David B. Searls
1994 A conf
Representations of Metabolic Knowledge: Pathways.
ISMB
Peter D. Karp, Suzanne M. Paley
1994 J jnl
Representing, Analyzing, and Synthesizing Biochemical Pathways.
IEEE Expert
Peter D. Karp, Michael L. Mavrovouniotis
1994 J jnl
The Grasper-CL Graph Management System.
LISP Symb. Comput.
Peter D. Karp, John D. Lowrance, Thomas M. Strat, David E. Wilkins
1993 J jnl
Design Methods for Scientific Hypothesis Formation and Their Application to Molecular Biology.
Mach. Learn.
Peter D. Karp
1993 — conf
Detection and elimination of inference channels in multilevel relational database systems.
S&P
Xiaolei Qian, Mark E. Stickel, Peter D. Karp, Teresa F. Lunt, Thomas D. Garvey
1993 A conf
Representations of Metabolic Knowledge.
ISMB
Peter D. Karp, Monica Riley
1992 J jnl
A knowledge base of the chemical compounds of intermediary metabolism.
Comput. Appl. Biosci.
Peter D. Karp
1991 J jnl
Artificial intelligence methods for theory representation and hypothesis formation.
Comput. Appl. Biosci.
Peter D. Karp
1990 J jnl
Hypothesis Formation and Qualitative Reasoning in Molecular Biology.
AI Mag.
Peter D. Karp
1989 — —
Hypothesis formation and qualitative reasoning in molecular biology.
Peter D. Karp