Peter A. C. 't Hoen

28 papers B 1Journal 21Unranked 6
YearRankTypeTitle / Venue / Authors
2025 — conf
FAIR in practice: minimum metadata schema for bioinformatics analytics by machines.
SWAT4HCLS
Daphne Wijnbergen, Núria Queralt-Rosinach, Valérie Barbié, Emma Verkinderen, Nirupama Benis, Annika Jacobsen, Peter A. C. 't Hoen, Claudio Carta, Marco Roos, Eleni Mina
2025 J jnl
The use of knowledge graphs for drug repurposing: From classical machine learning algorithms to graph neural networks.
Comput. Biol. Medicine
Siqi Wei, Christo Sasi, Jelle Piepenbrock, Martijn A. Huynen, Peter A. C. 't Hoen
2024 — conf
FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis.
SWAT4HCLS
Xiaofeng Liao, Yuliia Orlova, Cenna Doornbos, Anna Niehues, Casper de Visser, Junda Huang, Thomas H. A. Ederveen, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen
2024 J jnl
FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis.
J. Biomed. Semant.
Xiaofeng Liao, Thomas H. A. Ederveen, Anna Niehues, Casper de Visser, Junda Huang, Firdaws Badmus, Cenna Doornbos, Yuliia Orlova, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen
2024 — conf
Ontology enhanced FAIR Data Point searches.
SWAT4HCLS
Xiaofeng Liao, Coos Baakman, Kees Burger, Luiz Olavo Bonino da Silva Santos, Peter A. C. 't Hoen
2023 J jnl
A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR.
Data Sci. J.
Philip van Damme, Pablo Alarcón Moreno, César Henrique Bernabé, Alberto Cámara Ballesteros, Clémence M. A. Le Cornec, Bruna dos Santos Vieira, K. Joeri van der Velde, Shuxin Zhang, Claudio Carta, Ronald Cornet, Peter A. C. 't Hoen, Annika Jacobsen, Morris A. Swertz, Marco Roos, Nirupama Benis
2023 J jnl
Ten quick tips for building FAIR workflows.
PLoS Comput. Biol.
Casper de Visser, Lennart F. Johansson, Purva Kulkarni, Hailiang Mei, Pieter B. T. Neerincx, K. Joeri van der Velde, Peter Horvatovich, Alain J. van Gool, Morris A. Swertz, Peter A. C. 't Hoen, Anna Niehues
2021 J jnl
De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data.
J. Biomed. Informatics
Martijn G. Kersloot, Annika Jacobsen, Karlijn H. J. Groenen, Bruna dos Santos Vieira, Rajaram Kaliyaperumal, Ameen Abu-Hanna, Ronald Cornet, Peter A. C. 't Hoen, Marco Roos, Leo J. Schultze Kool, Derk L. Arts
2020 — conf
Applying the FAIR Data Principles to the Registry of Vascular Anomalies (VASCA).
dHealth
Bruna dos Santos Vieira, Karlijn H. J. Groenen, Peter A. C. 't Hoen, Annika Jacobsen, Marco Roos, Rajaram Kaliyaperumal, Martijn G. Kersloot, Ronald Cornet, Leo J. Schultze Kool
2017 — conf
Semantic Knowledge Graph Network Features for Drug Repurposing.
SWAT4LS
Tareq B. Malas, Roman Kudrin, Sergei Starikov, Dorien Peters, Marco Roos, Peter A. C. 't Hoen, Kristina M. Hettne
2016 J jnl
Consistency of biological networks inferred from microarray and sequencing data.
BMC Bioinform.
Veronica Vinciotti, Ernst C. Wit, Rick Jansen, Eco J. C. de Geus, Brenda W. J. H. Penninx, Dorret I. Boomsma, Peter A. C. 't Hoen
2015 — conf
Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites.
SWAT4LS
Eelke van der Horst, Rajaram Kaliyaperumal, Zuotian Tatum, Mark Thompson, Erik A. Schultes, Eleni Mina, Ivo Fokkema, Johan T. den Dunnen, Marco Roos, Jeroen F. J. Laros, Barend Mons, Kristina M. Hettne, Peter A. C. 't Hoen
2014 J jnl
Phd7faster: Predicting Clones Propagating Faster from the pH.D.-7 phage Display peptide Library.
J. Bioinform. Comput. Biol.
Beibei Ru, Peter A. C. 't Hoen, Fulei Nie, Hao Lin, Feng-Biao Guo, Jian Huang
2014 J jnl
Structuring research methods and data with the research object model: genomics workflows as a case study.
J. Biomed. Semant.
Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos
2013 J jnl
Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data.
BMC Bioinform.
Yanchun Bao, Veronica Vinciotti, Ernst Wit, Peter A. C. 't Hoen
2013 J jnl
Structuring research methods and data with the Research Object model: genomics workflows as a case study.
CoRR
Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos
2012 J jnl
PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data.
Bioinform.
Yanju Zhang, Eric-Wubbo Lameijer, Peter A. C. 't Hoen, Zemin Ning, P. Eline Slagboom, Kai Ye
2011 J jnl
Interspecies Translation of Disease Networks Increases Robustness and Predictive Accuracy.
PLoS Comput. Biol.
Seyed Yahya Anvar, Allan Tucker, Veronica Vinciotti, Andrea Venema, Gert-Jan B. van Ommen, Silvere M. van der Maarel, Vered Raz, Peter A. C. 't Hoen
2011 J jnl
Literature-aided interpretation of gene expression data with the weighted global test.
Briefings Bioinform.
Rob Jelier, Jelle J. Goeman, Kristina M. Hettne, Martijn J. Schuemie, Johan T. den Dunnen, Peter A. C. 't Hoen
2011 J jnl
mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance.
Nucleic Acids Res.
Peter A. C. 't Hoen, Michael Hirsch, Emile J. de Meijer, Renée X. de Menezes, Gert-Jan B. van Ommen, Johan T. den Dunnen
2010 J jnl
The identification of informative genes from multiple datasets with increasing complexity.
BMC Bioinform.
Seyed Yahya Anvar, Peter A. C. 't Hoen, Allan Tucker
2009 J jnl
Literature-based priors for gene regulatory networks.
Bioinform.
Emma Steele, Allan Tucker, Peter A. C. 't Hoen, Martijn J. Schuemie
2008 J jnl
CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes.
BMC Bioinform.
Matthew S. Hestand, Michiel van Galen, Michel P. Villerius, Gert-Jan B. van Ommen, Johan T. den Dunnen, Peter A. C. 't Hoen
2008 J jnl
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease.
BMC Bioinform.
Rob Jelier, Peter A. C. 't Hoen, Ellen Sterrenburg, Johan T. den Dunnen, Gert-Jan B. van Ommen, Jan A. Kors, Barend Mons
2008 J jnl
Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data.
Nucleic Acids Res.
Alexander E. Ivliev, Peter A. C. 't Hoen, Michel P. Villerius, Johan T. den Dunnen, Bernd W. Brandt
2006 J jnl
Exploiting the full power of temporal gene expression profiling through a new statistical test: Application to the analysis of muscular dystrophy data.
BMC Bioinform.
Veronica Vinciotti, Xiaohui Liu, Rolf Turk, Emile J. de Meijer, Peter A. C. 't Hoen
2006 J jnl
Temporal Bayesian classifiers for modelling muscular dystrophy expression data.
Intell. Data Anal.
Allan Tucker, Peter A. C. 't Hoen, Veronica Vinciotti, Xiaohui Liu
2005 B conf
Bayesian Network Classifiers for Time-Series Microarray Data.
IDA
Allan Tucker, Veronica Vinciotti, Peter A. C. 't Hoen, Xiaohui Liu