Perry G. Ridge

16 papers C 1Journal 12Unranked 3
YearRankTypeTitle / Venue / Authors
2023 J jnl
Evaluating a large language model's ability to solve programming exercises from an introductory bioinformatics course.
PLoS Comput. Biol.
Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge
2023 J jnl
Many bioinformatics programming tasks can be automated with ChatGPT.
CoRR
Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge
2019 J jnl
JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm.
Bioinform.
Justin Miller, Brandon D. Pickett, Perry G. Ridge
2017 J jnl
Kmer-SSR: a fast and exhaustive SSR search algorithm.
Bioinform.
Brandon D. Pickett, Justin Miller, Perry G. Ridge
2016 J jnl
A novel approach for multi-SNP GWAS and its application in Alzheimer's disease.
BMC Bioinform.
Paul M. Bodily, M. Stanley Fujimoto, Justin T. Page, Mark J. Clement, Mark T. W. Ebbert, Perry G. Ridge
2016 J jnl
Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches.
BMC Bioinform.
Mark T. W. Ebbert, Mark E. Wadsworth, Lyndsay A. Staley, Kaitlyn L. Hoyt, Brandon D. Pickett, Justin Miller, John Duce, John S. K. Kauwe, Perry G. Ridge
2016 J jnl
SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences.
Bioinform.
Brandon D. Pickett, S. M. Karlinsey, C. E. Penrod, Michael J. Cormier, Mark T. W. Ebbert, Dennis K. Shiozawa, C. J. Whipple, Perry G. Ridge
2014 — conf
Haplotype-centered mapping for improved alignments and genetic association studies.
BCB
Paul M. Bodily, Mark J. Clement, Quinn Snell, M. Stanley Fujimoto, Perry G. Ridge
2014 J jnl
Mitochondrial genomic variation associated with higher mitochondrial copy number: the Cache County Study on Memory Health and Aging.
BMC Bioinform.
Perry G. Ridge, Taylor J. Maxwell, Spencer J. Foutz, Matthew H. Bailey, Christopher D. Corcoran, JoAnn T. Tschanz, Maria C. Norton, Ronald G. Munger, Elizabeth O'Brien, Richard A. Kerber, Richard M. Cawthon, John S. K. Kauwe
2014 J jnl
Population substructure in Cache County, Utah: the Cache County study.
BMC Bioinform.
Aaron R. Sharp, Perry G. Ridge, Matthew H. Bailey, Kevin L. Boehme, Maria C. Norton, JoAnn T. Tschanz, Ronald G. Munger, Christopher D. Corcoran, John S. K. Kauwe
2014 J jnl
Variant Tool Chest: an improved tool to analyze and manipulate variant call format (VCF) files.
BMC Bioinform.
Mark T. W. Ebbert, Mark E. Wadsworth, Kevin L. Boehme, Kaitlyn L. Hoyt, Aaron R. Sharp, Brendan D. O'Fallon, John S. K. Kauwe, Perry G. Ridge
2013 J jnl
Cystic fibrosis testing in a referral laboratory: results and lessons from a six-year period.
J. Clin. Bioinform.
Perry G. Ridge, Christine Miller, Pinar Bayrak-Toydemir, D. Hunter Best, Rong Mao, Jeffrey J. Swensen, Elaine Lyon, Karl V. Voelkerding
2010 — conf
A novel representation of HLA allele specificity and prediction algorithm for HLA class I binding.
BCB
David K. Crockett, Perry G. Ridge
2010 — conf
Feature selection for characterizing HLA class I peptide motif anchors.
BCB
Perry G. Ridge, David K. Crockett
2007 J jnl
Phylogenies scores for exhaustive searches and parsimony scores searches.
Int. J. Bioinform. Res. Appl.
Hyrum Carroll, Perry G. Ridge, Mark J. Clement, Quinn Snell
2006 C conf
Large Grain Size Stochastic Optimization Alignment.
BIBE
Perry G. Ridge, Hyrum Carroll, Dan Sneddon, Mark J. Clement, Quinn Snell