Peng Qiu

82 papers A* 1A 2C 4Misc 3Journal 50Unranked 22
YearRankTypeTitle / Venue / Authors
2026 J jnl
Deconvolving cell-type-specific gene expression profiles from bulk RNA-seq samples.
PLoS Comput. Biol.
Sichen Zhu, Zhengqi Wang, Kevin D. Bunting, Peng Qiu
2025 — conf
AmpLyze: A Deep Learning Model for Predicting the Hemolytic Concentration.
BIBM
Peng Qiu, Hanqi Feng, Mengchun Zhang, Barnabas Poczos
2025 J jnl
AmpLyze: A Deep Learning Model for Predicting the Hemolytic Concentration.
CoRR
Peng Qiu, Hanqi Feng, Barnabás Póczos
2025 A* conf
Diffusion Generative Modeling for Spatially Resolved Gene Expression Inference from Histology Images.
ICLR
Sichen Zhu, Yuchen Zhu, Molei Tao, Peng Qiu
2025 J jnl
Diffusion Generative Modeling for Spatially Resolved Gene Expression Inference from Histology Images.
CoRR
Sichen Zhu, Yuchen Zhu, Molei Tao, Peng Qiu
2025 J jnl
Integrating Pathology Foundation Models and Spatial Transcriptomics for Cellular Decomposition from Histology Images.
CoRR
Yutong Sun, Sichen Zhu, Peng Qiu
2025 J jnl
Learning from B Cell Evolution: Adaptive Multi-Expert Diffusion for Antibody Design via Online Optimization.
CoRR
Hanqi Feng, Peng Qiu, Mengchun Zhang, Yiran Tao, You Fan, Jingtao Xu, Barnabás Póczos
2025 J jnl
MobRT: A Digital Twin-Based Framework for Scalable Learning in Mobile Manipulation.
CoRR
Yilin Mei, Peng Qiu, Wei Zhang, Wenchao Zhang, Wenjie Song
2025 A conf
Motion Control of a Hybrid Self-Reconfigurable Wheel-Legged Dual-Arm Robot.
IROS
Rui Zhang, Hong Du, Peng Qiu, Yi Yang, Wenjie Song
2025 A conf
Protocol Compliance in Popular RTC Applications.
IMC
Peiqing Chen, Peng Qiu, Lambda, Zaoxing Liu
2025 J jnl
Recursive Clustering of Cellular Diversity in scRNA-Seq Data.
J. Comput. Biol.
Michael Squires, Peng Qiu
2024 — conf
BASES: Large-scale Web Search User Simulation with Large Language Model based Agents.
EMNLP (Findings)
Ruiyang Ren, Peng Qiu, Yingqi Qu, Jing Liu, Xin Zhao, Hua Wu, Ji-Rong Wen, Haifeng Wang
2024 J jnl
BASES: Large-scale Web Search User Simulation with Large Language Model based Agents.
CoRR
Ruiyang Ren, Peng Qiu, Yingqi Qu, Jing Liu, Wayne Xin Zhao, Hua Wu, Ji-Rong Wen, Haifeng Wang
2024 J jnl
Gene representation bias in spatial transcriptomics.
J. Bioinform. Comput. Biol.
Xinling Li, Peng Qiu
2024 J jnl
Hierarchical marker genes selection in scRNA-seq analysis.
PLoS Comput. Biol.
Yutong Sun, Peng Qiu
2024 J jnl
Integrative multi-omics analyses reveal vesicle transport as a potential target for thoracic aortic aneurysm.
Comput. Biol. Medicine
Jiahao Lei, Peng Qiu, Zhaoyu Wu, Angang Ding, Jiateng Hu, Jingli Hou, Yihong Jiang, Hongji Pu, Qun Huang, Xing Zhang, Bo Li, Xin Wang, Kaichuang Ye, Zhijue Xu, Xinwu Lu
2024 J jnl
Quantifying the clusterness and trajectoriness of single-cell RNA-seq data.
PLoS Comput. Biol.
Hong Seo Lim, Peng Qiu
2023 J jnl
Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures.
CoRR
Shunxing Bao, Sichen Zhu, Vasantha L. Kolachala, Lucas W. Remedios, Yeonjoo Hwang, Yutong Sun, Ruining Deng, Can Cui, Yike Li, Jia Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Subra Kugathasan, Peng Qiu, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, Yuankai Huo
2023 J jnl
Gene representation in scRNA-seq is correlated with common motifs at the 3′ end of transcripts.
Frontiers Bioinform.
Xinling Li, Greg Gibson, Peng Qiu
2023 J jnl
Polycraft World AI Lab (PAL): An Extensible Platform for Evaluating Artificial Intelligence Agents.
CoRR
Stephen A. Goss, Robert J. Steininger, Dhruv Narayanan, Daniel V. Olivença, Yutong Sun, Peng Qiu, Jim Amato, Eberhard O. Voit, Walter E. Voit, Eric J. Kildebeck
2023 J jnl
Quantifying Cell-Type-Specific Differences of Single-Cell Datasets Using Uniform Manifold Approximation and Projection for Dimension Reduction and Shapley Additive exPlanations.
J. Comput. Biol.
Hong Seo Lim, Peng Qiu
2023 J jnl
Quantitative model for genome-wide cyclic AMP receptor protein binding site identification and characteristic analysis.
Briefings Bioinform.
Yigang Chen, Yang-Chi-Dung Lin, Yijun Luo, Xiao-Xuan Cai, Peng Qiu, Shi-Dong Cui, Zhe Wang, Hsi-Yuan Huang, Hsien-Da Huang
2023 — conf
UPCoL: Uncertainty-Informed Prototype Consistency Learning for Semi-supervised Medical Image Segmentation.
MICCAI (4)
Wenjing Lu, Jiahao Lei, Peng Qiu, Rui Sheng, Jinhua Zhou, Xinwu Lu, Yang Yang
2022 — conf
A contact pressure detection method of isolation switch based on Fiber Bragg Grating.
ICCIR
Zhen Meng, Peng Qiu, Yueming Pan
2022 — conf
FUSSNet: Fusing Two Sources of Uncertainty for Semi-supervised Medical Image Segmentation.
MICCAI (8)
Jinyi Xiang, Peng Qiu, Yang Yang
2021 — conf
Identification of Protein Markers Predictive of Drug-Specific Survival Outcome in Cancers.
ISBRA
Shuting Lin, Jie Zhou, Yiqiong Xiao, Bridget Neary, Yong Teng, Peng Qiu
2021 — conf
Immune-Microbiota Crosstalk Underlying Inflammatory Bowel Disease.
ISBRA
Congmin Xu, Quoc D. Mac, Qiong Jia, Peng Qiu
2021 J jnl
JSOM: Jointly-evolving self-organizing maps for alignment of biological datasets and identification of related clusters.
PLoS Comput. Biol.
Hong Seo Lim, Peng Qiu
2021 J jnl
Prescreening and treatment of aortic dissection through an analysis of infinite-dimension data.
BioData Min.
Peng Qiu, Yixuan Li, Kai Liu, Jinbao Qin, Kaichuang Ye, Tao Chen, Xinwu Lu
2020 J jnl
Classification of Antibacterial Peptides Using Long Short-Term Memory Recurrent Neural Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Michael Youmans, John Christian Givhan Spainhour, Peng Qiu
2020 — conf
Feature selection algorithms for predicting preeclampsia: A comparative approach.
BIBM
Jose F. Carreño, Peng Qiu
2020 — conf
Image-based early predictions of functional properties in cell manufacturing.
BIBM
Hong Seo Lim, Madeline E. Smerchansky, Jingxuan Zhou, Paramita Chatterjee, Angela C. Jimenez, Xingyu Yang, Krishnendu Roy, Peng Qiu
2020 J jnl
Leveraging TCGA gene expression data to build predictive models for cancer drug response.
BMC Bioinform.
Evan A. Clayton, Toyya A. Pujol, John F. McDonald, Peng Qiu
2020 J jnl
On-line reset control of a commercial-scale opposed multi-burner coal-water slurry gasification system using dynamic reduced-order model.
Comput. Chem. Eng.
Peng Qiu, Zhenghua Dai, Jianliang Xu, Qinghua Guo, Guangsuo Yu, Fuchen Wang
2020 J jnl
Shape-to-graph mapping method for efficient characterization and classification of complex geometries in biological images.
PLoS Comput. Biol.
William Pilcher, Xingyu Yang, Anastasia Zhurikhina, Olga Chernaya, Yinghan Xu, Peng Qiu, Denis Tsygankov
2019 — conf
An Efficient Cell Segmentation Algorithm Based on Unsupervised Clustering and Morphology.
BIBM
Jing Liu, Dawei Qiu, Xuelan Zhang, Peng Qiu, Yibo Feng, Huifen Li
2019 J jnl
Deconvolving multiplexed protease signatures with substrate reduction and activity clustering.
PLoS Comput. Biol.
Qinwei Zhuang, Brandon Alexander Holt, Gabriel A. Kwong, Peng Qiu
2019 J jnl
Radar and vision fusion for the real-time obstacle detection and identification.
Ind. Robot
Xinyu Zhang, Mo Zhou, Peng Qiu, Yi Huang, Jun Li
2018 J jnl
A High-Speed Imaging Method Based on Compressive Sensing for Sound Extraction Using a Low-Speed Camera.
Sensors
Ge Zhu, Xu-Ri Yao, Zhibin Sun, Peng Qiu, Chao Wang, Guang-Jie Zhai, Qing Zhao
2018 J jnl
Experimental design and model reduction in systems biology.
Quant. Biol.
Jenny Jeong, Qinwei Zhuang, Mark K. Transtrum, Enlu Zhou, Peng Qiu
2018 J jnl
Multi-objective service composition model based on cost-effective optimization.
Appl. Intell.
Ying Huo, Peng Qiu, Jiyou Zhai, Dajuan Fan, Huanfeng Peng
2017 C conf
Comparison of DC fault handling strategies for hybrid HVDC system.
IECON
Yi Lu, Jihong Li, Peng Qiu, Huangqing Xiao, Gaoren Liu, Zheng Xu
2017 J jnl
GDISC: a web portal for integrative analysis of gene-drug interaction for survival in cancer.
Bioinform.
John Christian Givhan Spainhour, Juho Lim, Peng Qiu
2017 — conf
Graph-based extraction of shape features for leaf classification.
GlobalSIP
Andrew Zhao, Denis Tsygankov, Peng Qiu
2017 — conf
Long short-term memory recurrent neural networks for antibacterial peptide identification.
BIBM
Michael Youmans, Christian Spainhour, Peng Qiu
2017 C conf
Power loss and efficiency analysis of non-isolated weinberg converter.
IECON
Qian Chen, Peng Qiu, Yi Lu, Haihong Yu, Feng Xu, Kai Tong, Jiazhuo Xuan, Jiayi Wu
2017 C conf
Research on flexible medium-voltage DC distribution technology based shore-to-ship power supply system.
IECON
Feng Xu, Yi Lu, Xiaohua Xuan, Peng Qiu, Kai Tong, Jiazhuo Xuan, Qian Chen, Daozhuo Jiang
2017 — conf
The relative importance of data points in systems biology and parameter estimation.
BIBM
Jenny Jeong, Peng Qiu
2016 J jnl
Bridging Mechanistic and Phenomenological Models of Complex Biological Systems.
PLoS Comput. Biol.
Mark K. Transtrum, Peng Qiu
2016 J jnl
Identification of gene-drug interactions that impact patient survival in TCGA.
BMC Bioinform.
John Christian Givhan Spainhour, Peng Qiu
2015 C conf
Flexible power distribution unit - A novel power electronic transformer development and demonstration for distribution system.
IECON
Qing Duan, Jianhua Wang, Chunyan Ma, Binshi Gu, Baojian Ji, Peng Qiu, Jun You
2015 J jnl
Unsupervised Discovery of Subspace Trends.
IEEE Trans. Pattern Anal. Mach. Intell.
Yan Xu, Peng Qiu, Badrinath Roysam
2014 Misc conf
An iterative algorithm for sampling from manifolds.
WSC
Chang-Han Rhee, Enlu Zhou, Peng Qiu
2014 J jnl
BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yanxun Xu, Xiaofeng Zheng, Yuan Yuan, Marcos R. Estecio, Jean-Pierre Issa, Peng Qiu, Yuan Ji, Shoudan Liang
2014 J jnl
Improving the sensitivity of sample clustering by leveraging gene co-expression networks in variable selection.
BMC Bioinform.
Zixing Wang, F. Anthony San Lucas, Peng Qiu, Yin Liu
2014 — conf
Spectral feature selection and its application in high dimensional gene expression studies.
BCB
Zixing Wang, Peng Qiu, Wenlong Xu, Yin Liu
2014 J jnl
Unfold High-Dimensional Clouds for Exhaustive Gating of Flow Cytometry Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Peng Qiu
2013 J jnl
Identification of thresholds for dichotomizing DNA methylation data.
EURASIP J. Bioinform. Syst. Biol.
Yihua Liu, Yuan Ji, Peng Qiu
2013 J jnl
TreeVis: A MATLAB-based tool for tree visualization.
Comput. Methods Programs Biomed.
Peng Qiu, Sylvia K. Plevritis
2013 — conf
Unsupervised inference of arbor morphology progression for microglia from confocal microscope images.
ISBI
Yan Xu, Michalis A. Savelonas, Peng Qiu, Kristen Trett, William Shain, Badrinath Roysam
2012 J jnl
CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data.
Bioinform.
Michael D. Linderman, Zach Bjornson, Erin F. Simonds, Peng Qiu, Robert V. Bruggner, Ketaki Sheode, Teresa H. Meng, Sylvia K. Plevritis, Garry P. Nolan
2012 J jnl
Identification of markers associated with global changes in DNA methylation regulation in cancers.
BMC Bioinform.
Peng Qiu, Li Zhang
2012 — conf
Integrative analysis of methylation and gene expression data in TCGA.
GENSiPS
Yihua Liu, Peng Qiu
2012 J jnl
Optimal experiment selection for parameter estimation in biological differential equation models.
BMC Bioinform.
Mark K. Transtrum, Peng Qiu
2012 — conf
Toward exhaustive gating of flow cytometry data.
GENSiPS
Peng Qiu
2011 J jnl
Discovering Biological Progression Underlying Microarray Samples.
PLoS Comput. Biol.
Peng Qiu, Andrew J. Gentles, Sylvia K. Plevritis
2011 J jnl
Reconstructing Directed Signed Gene Regulatory Network From Microarray Data.
IEEE Trans. Biomed. Eng.
Peng Qiu, Sylvia K. Plevritis
2010 Misc conf
Dynamic spectrum allocation engine based on DS theory and potential game.
ICNC
Yun Zhang, Yujun Feng, Di Wu, Chenxi Hou, Peng Qiu
2010 J jnl
Reducing the Computational Complexity of Information Theoretic Approaches for Reconstructing Gene Regulatory Networks.
J. Comput. Biol.
Peng Qiu, Andrew J. Gentles, Sylvia K. Plevritis
2009 J jnl
An Activity-Subspace Approach for Estimating the Integrated Input Function and Relative Distribution Volume in PET Parametric Imaging.
IEEE Trans. Inf. Technol. Biomed.
Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zsolt Szabo
2009 J jnl
Fast calculation of pairwise mutual information for gene regulatory network reconstruction.
Comput. Methods Programs Biomed.
Peng Qiu, Andrew J. Gentles, Sylvia K. Plevritis
2009 — conf
Modeling of Neuron Based on Single Electron Transistor.
CSO (1)
Peng Qiu, Guanglong Wang, Jianglei Lu, Shuang Feng
2009 J jnl
Simultaneous Class Discovery and Classification of Microarray Data Using Spectral Analysis.
J. Comput. Biol.
Peng Qiu, Sylvia K. Plevritis
2008 Misc conf
A robust method for QRS detection based on modified p-spectrum.
ICASSP
Peng Qiu, K. J. Ray Liu
2007 J jnl
Dependence network modeling for biomarker identification.
Bioinform.
Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zhang-Zhi Hu, Cathy H. Wu
2007 J jnl
Genomic processing for cancer classification and prediction - Abroad review of the recent advances in model-based genomoric and proteomic signal processing for cancer detection.
IEEE Signal Process. Mag.
Peng Qiu, Z. Jane Wang, K. J. Ray Liu
2006 — conf
Dependence model and network for biomarker identification and cancer classification.
EUSIPCO
Peng Qiu, Z. Jane Wang, K. J. Ray Liu
2006 — conf
Mixture principal component analysis for distribution volume parametric imaging in brain PET studies.
ISBI
Peng Qiu, Z. Jane Wang, K. J. Ray Liu
2006 J jnl
Polynomial model approach for resynchronization analysis of cell-cycle gene expression data.
Bioinform.
Peng Qiu, Z. Jane Wang, K. J. Ray Liu
2005 J jnl
Ensemble dependence model for classification and prediction of cancer and normal gene expression data.
Bioinform.
Peng Qiu, Z. Jane Wang, K. J. Ray Liu
2004 — conf
Research on the Foundation Protocols of UCard.
CCCT (1)
Jichang Cao, Bin Zhang, Peng Qiu, Chun Li, Fan Zhang
2004 — conf
The Research of Storage Management and Address Mapping Mechanism in UCard.
CCCT (1)
Jichang Cao, Peng Qiu, Bin Zhang, Chun Li