Pei Fen Kuan

13 papers Misc 2Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
A systematic evaluation of cell-type-specific differential methylation analysis in bulk tissue.
Briefings Bioinform.
Shuo Li, Pei Fen Kuan
2022 J jnl
A systematic assessment of cell type deconvolution algorithms for DNA methylation data.
Briefings Bioinform.
Junyan Song, Pei Fen Kuan
2022 J jnl
Efficient gradient boosting for prognostic biomarker discovery.
Bioinform.
Kaiqiao Li, Sijie Yao, Zhenyu Zhang, Biwei Cao, Christopher M. Wilson, Denise Kalos, Pei Fen Kuan, Ruoqing Zhu, Xuefeng Wang
2021 J jnl
Fenchel duality of Cox partial likelihood with an application in survival kernel learning.
Artif. Intell. Medicine
Christopher M. Wilson, Kaiqiao Li, Qiang Sun, Pei Fen Kuan, Xuefeng Wang
2020 J jnl
Negative binomial additive model for RNA-Seq data analysis.
BMC Bioinform.
Xu Ren, Pei Fen Kuan
2019 J jnl
Multiple-kernel learning for genomic data mining and prediction.
BMC Bioinform.
Christopher M. Wilson, Kaiqiao Li, Xiaoqing Yu, Pei Fen Kuan, Xuefeng Wang
2019 J jnl
methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing.
Bioinform.
Xu Ren, Pei Fen Kuan
2017 J jnl
A systematic evaluation of nucleotide properties for CRISPR sgRNA design.
BMC Bioinform.
Pei Fen Kuan, R. Scott Powers, Shuyao He, Kaiqiao Li, Xiaoyu Zhao, Bo Huang
2017 Misc conf
methylDMV: Simultaneous Detection of Differential DNA Methylation and Variability with Confounder Adjustment.
PSB
Pei Fen Kuan, Junyan Song, Shuyao He
2011 J jnl
Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data.
PLoS Comput. Biol.
Dongjun Chung, Pei Fen Kuan, Bo Li, Rajendran Sanalkumar, Kun Liang, Emery H. Bresnick, Colin N. Dewey, Sündüz Keles
2010 J jnl
A statistical framework for Illumina DNA methylation arrays.
Bioinform.
Pei Fen Kuan, Sijian Wang, Xin Zhou, Haitao Chu
2010 J jnl
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data.
BMC Bioinform.
Benedikt Zacher, Pei Fen Kuan, Achim Tresch
2008 Misc conf
CMARRT: A Tool of Analysis of CHIP-chip Data from Tiling Arrays by Incorporating the Correlation Structure.
Pacific Symposium on Biocomputing
Pei Fen Kuan, Hyonho Chun, Sündüz Keles