Pedro Carmona-Saez

30 papers B 2Journal 26Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Effect Size-Driven Pathway Meta-Analysis for Gene Expression Data.
IEEE Trans. Comput. Biol. Bioinform.
Juan Antonio Villatoro-García, Pablo Pedro Jurado-Bascón, Pedro Carmona-Saez
2025 J jnl
A Survey of Preprocessing Techniques for Flow Cytometry Data in Classification Tasks.
IEEE Trans. Comput. Biol. Bioinform.
David Núñez-Nepomuceno, José A. Sáez, Pedro Carmona-Saez
2025 J jnl
Benchmarking single-sample gene set scoring methods for application in precision medicine.
Briefings Bioinform.
Daniel Toro-Domínguez, Chang Wang, Iván Ellson-Lancho, Jordi Martorell-Marugan, Raúl López-Domínguez, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme, Frédéric Baribaud
2025 J jnl
Explainable deep neural networks for predicting sample phenotypes from single-cell transcriptomics.
Briefings Bioinform.
Jordi Martorell-Marugan, Raúl López-Domínguez, Juan Antonio Villatoro-García, Daniel Toro-Domínguez, Marco Chierici, Giuseppe Jurman, Pedro Carmona-Saez
2025 J jnl
Network analysis of longitudinal electronic health records using linear mixed models.
BioData Min.
Marina Vargas-Fernández, Juan de Dios Luna, Jordi Martorell-Marugan, Pedro Carmona-Saez
2024 J jnl
Response to the letter 'testing the effectiveness of MyPROSLE in classifying patients with lupus nephritis'.
Briefings Bioinform.
Daniel Toro-Domínguez, Jordi Martorell-Marugan, Manuel Martínez-Bueno, Raúl López-Domínguez, Elena Carnero-Montoro, Guillermo Barturen, Daniel Goldman, Michelle Petri, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme
2023 J jnl
Differential diagnosis of systemic lupus erythematosus and Sjögren's syndrome using machine learning and multi-omics data.
Comput. Biol. Medicine
Jordi Martorell-Marugan, Marco Chierici, Giuseppe Jurman, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
2022 J jnl
Scoring personalized molecular portraits identify Systemic Lupus Erythematosus subtypes and predict individualized drug responses, symptomatology and disease progression.
Briefings Bioinform.
Daniel Toro-Domínguez, Jordi Martorell-Marugan, Manuel Martínez-Bueno, Raúl López-Domínguez, Elena Carnero-Montoro, Guillermo Barturen, Daniel Goldman, Michelle Petri, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme
2022 J jnl
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.
Nucleic Acids Res.
Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer, Adrián García-Moreno, Pedro Carmona-Saez, Bastian Fromm, Michiel Pegtel, Andreas Keller, Juan Antonio Marchal, Michael Hackenberg
2021 J jnl
A comprehensive database for integrated analysis of omics data in autoimmune diseases.
BMC Bioinform.
Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Guillermo Barturen, Adoración Martín-Gómez, Kevin Troulé, Gonzalo Gómez-López, Fátima Al-Shahrour, Víctor González-Rumayor, María Peña-Chilet, Joaquín Dopazo, Julio Sáez-Rodríguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
2021 J jnl
A survey of gene expression meta-analysis: methods and applications.
Briefings Bioinform.
Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Jordi Martorell-Marugan, Yolanda Román-Montoya, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
2021 J jnl
DREIMT: a drug repositioning database and prioritization tool for immunomodulation.
Bioinform.
Kevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López
2019 J jnl
ImaGEO: integrative gene expression meta-analysis from GEO database.
Bioinform.
Daniel Toro-Domínguez, Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Víctor González-Rumayor, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
2019 J jnl
mCSEA: detecting subtle differentially methylated regions.
Bioinform.
Jordi Martorell-Marugan, Víctor González-Rumayor, Pedro Carmona-Saez
2017 J jnl
MetaGenyo: a web tool for meta-analysis of genetic association studies.
BMC Bioinform.
Jordi Martorell-Marugan, Daniel Toro-Domínguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
2017 J jnl
Metagene projection characterizes GEN2.2 and CAL-1 as relevant human plasmacytoid dendritic cell models.
Bioinform.
Pedro Carmona-Saez, Nieves Varela, María José Luque, Daniel Toro-Domínguez, Jordi Martorell-Marugan, Marta E. Alarcón-Riquelme, Concepción Marañón
2011 B conf
Finding closed frequent item sets by intersecting transactions.
EDBT
Christian Borgelt, Xiaoyuan Yang, Rubén Nogales-Cadenas, Pedro Carmona-Saez, Alberto D. Pascual-Montano
2010 J jnl
MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.
Nucleic Acids Res.
Miguel Vázquez, Rubén Nogales-Cadenas, Javier Arroyo, Pedro Botías, Raul García, José María Carazo, Francisco Tirado, Alberto D. Pascual-Montano, Pedro Carmona-Saez
2010 — conf
Rbbt: A Framework for Fast Bioinformatics Development with Ruby.
IWPACBB
Miguel Vázquez, Rubén Nogales, Pedro Carmona-Saez, Alberto Pascual, Juan Pavón
2009 J jnl
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.
Nucleic Acids Res.
Rubén Nogales-Cadenas, Pedro Carmona-Saez, Miguel Vázquez, Cesar Vicente, Xiaoyuan Yang, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
2009 J jnl
SENT: semantic features in text.
Nucleic Acids Res.
Miguel Vázquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
2008 J jnl
ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.
Bioinform.
Federico Abascal, Pedro Carmona-Saez, José María Carazo, Alberto D. Pascual-Montano
2008 J jnl
bioNMF: a web-based tool for nonnegative matrix factorization in biology.
Nucleic Acids Res.
Edgardo Mejía-Roa, Pedro Carmona-Saez, Rubén Nogales, Cesar Vicente, Miguel Vázquez, X. Y. Yang, Carlos García, Francisco Tirado, Alberto D. Pascual-Montano
2006 J jnl
A literature-based similarity metric for biological processes.
BMC Bioinform.
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, José María Carazo, Alberto D. Pascual-Montano
2006 J jnl
Biclustering of gene expression data by non-smooth non-negative matrix factorization.
BMC Bioinform.
Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
2006 J jnl
Discovering semantic features in the literature: a foundation for building functional associations.
BMC Bioinform.
Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano
2006 J jnl
Integrated analysis of gene expression by association rules discovery.
BMC Bioinform.
Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano
2006 J jnl
bioNMF: a versatile tool for non-negative matrix factorization in biology.
BMC Bioinform.
Alberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, José María Carazo, Roberto D. Pascual-Marqui
2005 B conf
Knowledge Discovery in the Identification of Differentially Expressed Genes in Tumoricidal Macrophage.
IDA
A. Fazel Famili, Ziying Liu, Pedro Carmona-Saez, Alaka Mullick
2005 — conf
Two-way clustering of gene expression profiles by sparse matrix factorization.
CSB Workshops
Alberto D. Pascual-Montano, Francisco Tirado, Pedro Carmona-Saez, José María Carazo, Roberto D. Pascual-Marqui