Pearlly Yan

14 papers Misc 1Journal 11Unranked 2
YearRankTypeTitle / Venue / Authors
2016 J jnl
Statistical methods for detecting differentially methylated regions based on MethylCap-seq data.
Briefings Bioinform.
Deepak Nag Ayyala, David E. Frankhouser, Javkhlan-Ochir Ganbat, Guido Marcucci, Ralf Bundschuh, Pearlly Yan, Shili Lin
2014 J jnl
PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data.
Bioinform.
David E. Frankhouser, Mark Murphy, James S. Blachly, Jincheol Park, Mike W. Zoller, Javkhlan-Ochir Ganbat, John Curfman, John C. Byrd, Shili Lin, Guido Marcucci, Pearlly Yan, Ralf Bundschuh
2011 J jnl
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.
BMC Syst. Biol.
Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li
2011 — conf
A scalable, flexible workflow for MethylCap-seq data analysis.
GENSiPS
Benjamin Rodriguez, Hok-Hei Tam, David Frankhouser, Michael Trimarchi, Mark Murphy, Chris Kuo, Deval Parikh, Bryan Ball, Sebastian Schwind, John Curfman, William Blum, Guido Marcucci, Pearlly Yan, Ralf Bundschuh
2011 J jnl
Identifying hypermethylated CpG islands using a quantile regression model.
BMC Bioinform.
Shuying Sun, Zhengyi Chen, Pearlly Yan, Yi-Wen Huang, Tim Hui-Ming Huang, Shili Lin
2011 J jnl
Preprocessing differential methylation hybridization microarray data.
BioData Min.
Shuying Sun, Yi-Wen Huang, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
2009 J jnl
An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.
BMC Syst. Biol.
Huaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri
2009 J jnl
Comparative study on ChIP-seq data: normalization and binding pattern characterization.
Bioinform.
Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang
2009 — conf
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.
BIBM
Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç
2009 J jnl
Identifying differentially methylated genes using mixed effect and generalized least square models.
BMC Bioinform.
Shuying Sun, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
2008 J jnl
Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands.
BMC Bioinform.
Wei Dai, Jens M. Teodoridis, Janet Graham, Constanze Zeller, Tim Hui-Ming Huang, Pearlly Yan, J. Keith Vass, Robert Brown, Jim Paul
2008 J jnl
Probe signal correction for differential methylation hybridization experiments.
BMC Bioinform.
Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
2007 J jnl
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data.
BMC Bioinform.
Zailong Wang, Pearlly Yan, Dustin P. Potter, Charis Eng, Tim Hui-Ming Huang, Shili Lin
2001 Misc conf
Online Microarray Laboratory Information Management System (M-LIMS): Linking Health Informatics and Bioinformatics.
AMIA
Harpreet K. Monga, Adam L. Asare, Pearlly Yan, Tim Hui-Ming Huang, Charles William Caldwell