Pawel Górecki

57 papers B 1C 3Misc 4Journal 30Unranked 19
YearRankTypeTitle / Venue / Authors
2025 J jnl
Computing generalized cophenetic distances under all Lp norms: A near-linear time algorithmic framework.
PLoS Comput. Biol.
Pawel Górecki, Alexey Markin, Sriram Vijendran, Oliver Eulenstein
2024 J jnl
Asymmetric Cluster-Based Measures for Comparative Phylogenetics.
J. Comput. Biol.
Sanket Wagle, Alexey Markin, Pawel Górecki, Tavis K. Anderson, Oliver Eulenstein
2024 J jnl
Phylogenetic network-assisted rooting of unrooted gene trees.
J. Comb. Optim.
Jerzy Tiuryn, Natalia Rutecka, Pawel Górecki
2024 — conf
Robinson-Foulds distance between phylogenetic networks and gene trees.
BCB
Natalia Rutecka, Agnieszka Mykowiecka, Jaroslaw Paszek, Pawel Górecki
2024 J jnl
Unifying duplication episode clustering and gene-species mapping inference.
Algorithms Mol. Biol.
Pawel Górecki, Natalia Rutecka, Agnieszka Mykowiecka, Jaroslaw Paszek
2023 C conf
Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings.
WABI
Pawel Górecki, Natalia Rutecka, Agnieszka Mykowiecka, Jaroslaw Paszek
2023 — conf
The Asymmetric Cluster Affinity Cost.
RECOMB-CG
Sanket Wagle, Alexey Markin, Pawel Górecki, Tavis K. Anderson, Oliver Eulenstein
2022 J jnl
Embedding gene trees into phylogenetic networks by conflict resolution algorithms.
Algorithms Mol. Biol.
Marcin Wawerka, Dawid Dabkowski, Natalia Rutecka, Agnieszka Mykowiecka, Pawel Górecki
2022 Misc conf
Rooting Gene Trees via Phylogenetic Networks.
COCOON
Jerzy Tiuryn, Natalia Rutecka, Pawel Górecki
2022 — conf
Scalable and Extensible Robinson-Foulds for Comparative Phylogenetics.
IPDPS Workshops
Alvin Chon, Pawel Górecki, Oliver Eulenstein, Xiaoqiu Huang, Ali Jannesari
2021 C conf
Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks.
WABI
Marcin Wawerka, Dawid Dabkowski, Natalia Rutecka, Agnieszka Mykowiecka, Pawel Górecki
2021 J jnl
Consensus of All Solutions for Intractable Phylogenetic Tree Inference.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pawel Tabaszewski, Pawel Górecki, Alexey Markin, Tavis K. Anderson, Oliver Eulenstein
2021 — conf
Novel genomic duplication models through integer linear programming.
BCB
Jaroslaw Paszek, Oliver Eulenstein, Pawel Górecki
2021 J jnl
Taming the Duplication-Loss-Coalescence Model with Integer Linear Programming.
J. Comput. Biol.
Jaroslaw Paszek, Alexey Markin, Pawel Górecki, Oliver Eulenstein
2021 J jnl
The Unconstrained Diameters of the Duplication-Loss Cost and the Loss Cost.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pawel Górecki, Oliver Eulenstein, Jerzy Tiuryn
2020 — conf
Integer Linear Programming Formulation for the Unified Duplication-Loss-Coalescence Model.
ISBRA
Javad Ansarifar, Alexey Markin, Pawel Górecki, Oliver Eulenstein
2020 J jnl
Minimizing genomic duplication episodes.
Comput. Biol. Chem.
Jaroslaw Paszek, Jerzy Tiuryn, Pawel Górecki
2019 J jnl
Credibility of Evolutionary Events in Gene Trees.
IEEE ACM Trans. Comput. Biol. Bioinform.
Agnieszka Mykowiecka, Pawel Górecki
2019 Misc conf
Feasibility Algorithms for the Duplication-Loss Cost.
COCOON
Pawel Górecki, Alexey Markin, Oliver Eulenstein
2019 J jnl
Mathematical properties of the gene duplication cost.
Discret. Appl. Math.
Pawel Górecki, Agnieszka Mykowiecka, Jaroslaw Paszek, Oliver Eulenstein
2018 J jnl
Bijective Diameters of Gene Tree Parsimony Costs.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pawel Górecki, Oliver Eulenstein
2018 Misc conf
Cophenetic Distances: A Near-Linear Time Algorithmic Framework.
COCOON
Pawel Górecki, Alexey Markin, Oliver Eulenstein
2018 J jnl
Efficient Algorithms for Genomic Duplication Models.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jaroslaw Paszek, Pawel Górecki
2018 J jnl
Inferring Gene-Species Assignments in the Presence of Horizontal Gene Transfer.
IEEE ACM Trans. Comput. Biol. Bioinform.
Agnieszka Mykowiecka, Pawel Szczesny, Pawel Górecki
2018 — conf
Inferring time-consistent and well-supported horizontal gene transfers.
BIBM
Agnieszka Mykowiecka, Anna Muszewska, Pawel Górecki
2018 J jnl
Locus-aware decomposition of gene trees with respect to polytomous species trees.
Algorithms Mol. Biol.
Michal Aleksander Ciach, Anna Muszewska, Pawel Górecki
2018 J jnl
Minimizing the deep coalescence cost.
J. Bioinform. Comput. Biol.
Dawid Dabkowski, Pawel Tabaszewski, Pawel Górecki
2018 — conf
Phylogenetic Consensus for Exact Median Trees.
BCB
Pawel Tabaszewski, Pawel Górecki, Oliver Eulenstein
2017 C conf
Detecting Locus Acquisition Events in Gene Trees.
WABI
Michal Aleksander Ciach, Anna Muszewska, Pawel Górecki
2017 — conf
New Algorithms for the Genomic Duplication Problem.
RECOMB-CG
Jaroslaw Paszek, Pawel Górecki
2017 — conf
Phylogenetic Tree Reconciliation: Mean Values for Fixed Gene Trees.
ISBRA
Pawel Górecki, Alexey Markin, Agnieszka Mykowiecka, Jaroslaw Paszek, Oliver Eulenstein
2017 J jnl
Unconstrained Diameters for Deep Coalescence.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pawel Górecki, Jaroslaw Paszek, Oliver Eulenstein
2016 — conf
Bootstrapping Algorithms for Gene Duplication and Speciation Events.
AlCoB
Agnieszka Mykowiecka, Pawel Górecki
2016 J jnl
Genomic duplication problems for unrooted gene trees.
BMC Genom.
Jaroslaw Paszek, Pawel Górecki
2016 — conf
Mean Values of Gene Duplication and Loss Cost Functions.
ISBRA
Pawel Górecki, Jaroslaw Paszek, Agnieszka Mykowiecka
2015 — conf
Fast Algorithms for Inferring Gene-Species Associations.
ISBRA
Arkadiusz Betkier, Pawel Szczesny, Pawel Górecki
2015 J jnl
Gene Tree Diameter for Deep Coalescence.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pawel Górecki, Oliver Eulenstein
2014 J jnl
DrML: Probabilistic Modeling of Gene Duplications.
J. Comput. Biol.
Pawel Górecki, Oliver Eulenstein
2014 — conf
Duplication Cost Diameters.
ISBRA
Pawel Górecki, Jaroslaw Paszek, Oliver Eulenstein
2014 J jnl
Maximizing Deep Coalescence Cost.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pawel Górecki, Oliver Eulenstein
2014 J jnl
Refining discordant gene trees.
BMC Bioinform.
Pawel Górecki, Oliver Eulenstein
2014 — conf
Unconstrained gene tree diameters for deep coalescence.
BCB
Pawel Górecki, Jaroslaw Paszek, Oliver Eulenstein
2013 J jnl
Exact solutions for species Tree Inference from discordant gene Trees.
J. Bioinform. Comput. Biol.
Wen-Chieh Chang, Pawel Górecki, Oliver Eulenstein
2013 J jnl
Unrooted Tree Reconciliation: A Unified Approach.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pawel Górecki, Oliver Eulenstein, Jerzy Tiuryn
2012 — conf
A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees.
ISBRA
Pawel Górecki, Oliver Eulenstein
2012 J jnl
Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem.
BMC Bioinform.
Pawel Górecki, Oliver Eulenstein
2012 Misc conf
Deep Coalescence Reconciliation with Unrooted Gene Trees: Linear Time Algorithms.
COCOON
Pawel Górecki, Oliver Eulenstein
2012 — conf
GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches.
ISBRA
Pawel Górecki, J. Gordon Burleigh, Oliver Eulenstein
2012 — conf
Inferring Evolutionary Scenarios in the Duplication, Loss and Horizontal Gene Transfer Model.
Logic and Program Semantics
Pawel Górecki, Jerzy Tiuryn
2011 — conf
A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene Trees.
ISBRA
Pawel Górecki, Oliver Eulenstein
2011 J jnl
Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.
BMC Bioinform.
Pawel Górecki, J. Gordon Burleigh, Oliver Eulenstein
2010 J jnl
H-trees: a Model of Evolutionary Scenarios with Horizontal Gene Transfer.
Fundam. Informaticae
Pawel Górecki
2007 J jnl
Inferring phylogeny from whole genomes.
Bioinform.
Pawel Górecki, Jerzy Tiuryn
2007 J jnl
URec: a system for unrooted reconciliation.
Bioinform.
Pawel Górecki, Jerzy Tiuryn
2006 J jnl
DLS-trees: A model of evolutionary scenarios.
Theor. Comput. Sci.
Pawel Górecki, Jerzy Tiuryn
2004 — conf
On the Structure of Reconciliations.
Comparative Genomics
Pawel Górecki, Jerzy Tiuryn
2004 B conf
Reconciliation problems for duplication, loss and horizontal gene transfer.
RECOMB
Pawel Górecki