Pavlos Pavlidis

16 papers B 1C 1Journal 9Unranked 5
YearRankTypeTitle / Venue / Authors
2023 J jnl
Genome-wide scans for selective sweeps using convolutional neural networks.
Bioinform.
Hanqing Zhao, Matthijs Leon Souilljee, Pavlos Pavlidis, Nikolaos Alachiotis
2023 — conf
SweepNet: A Lightweight CNN Architecture for the Classification of Adaptive Genomic Regions.
PASC
Hanqing Zhao, Pavlos Pavlidis, Nikolaos Alachiotis
2022 J jnl
Cronos: A Machine Learning Pipeline for Description and Predictive Modeling of Microbial Communities Over Time.
Frontiers Bioinform.
Aristeidis Litos, Evangelia Intze, Pavlos Pavlidis, Ilias Lagkouvardos
2021 J jnl
Structural classification of proteins based on the computationally efficient recurrence quantification analysis and horizontal visibility graphs.
Bioinform.
Michaela Areti Zervou, Effrosyni Doutsi, Pavlos Pavlidis, Panagiotis Tsakalides
2020 — conf
Efficient Dynamic Analysis of Low-similarity Proteins for Structural Class Prediction.
EUSIPCO
Michaela Areti Zervou, Effrosyni Doutsi, Pavlos Pavlidis, Panagiotis Tsakalides
2020 C conf
qLD: High-performance Computation of Linkage Disequilibrium on CPU and GPU.
BIBE
Charalampos Theodoris, Nikolaos Alachiotis, Tze Meng Low, Pavlos Pavlidis
2017 B conf
Deploying FPGAs to future-proof genome-wide analyses based on linkage disequilibrium.
FPL
Dimitrios Bozikas, Nikolaos Alachiotis, Pavlos Pavlidis, Euripides Sotiriades, Apostolos Dollas
2017 J jnl
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo.
Bioinform.
Paschalia Kapli, Sarah Lutteropp, Jiajie Zhang, Kassian Kobert, Pavlos Pavlidis, Alexandros Stamatakis, Tomás Flouri
2017 J jnl
VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences.
BMC Bioinform.
Duo Xu, Yousef Jaber, Pavlos Pavlidis, Omer Gokcumen
2014 J jnl
1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans.
Nucleic Acids Res.
Marc Pybus, Giovanni Marco Dall'Olio, Pierre Luisi, Manu Uzkudun, Angel Carreño-Torres, Pavlos Pavlidis, Hafid Laayouni, Jaume Bertranpetit, Johannes Engelken
2013 J jnl
A general species delimitation method with applications to phylogenetic placements.
Bioinform.
Jiajie Zhang, Paschalia Kapli, Pavlos Pavlidis, Alexandros Stamatakis
2013 — conf
Accelerating String Matching on MIC Architecture for Motif Extraction.
PPAM (2)
Solon P. Pissis, Christian Goll, Pavlos Pavlidis, Alexandros Stamatakis
2013 — conf
MoTeX: A word-based HPC tool for MoTif eXtraction.
BCB
Solon P. Pissis, Alexandros Stamatakis, Pavlos Pavlidis
2012 — conf
Exploiting Multi-grain Parallelism for Efficient Selective Sweep Detection.
ICA3PP (1)
Nikolaos Alachiotis, Pavlos Pavlidis, Alexandros Stamatakis
2012 J jnl
OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets.
Bioinform.
Nikolaos Alachiotis, Alexandros Stamatakis, Pavlos Pavlidis
2006 J jnl
Individualized markers optimize class prediction of microarray data.
BMC Bioinform.
Pavlos Pavlidis, Panayiota Poirazi