Pavlo Lutsik

11 papers Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
Figeno: multi-region genomic figures with long-read support.
Bioinform.
Etienne Sollier, Jessica Heilmann, Clarissa Gerhauser, Michael Scherer, Christoph Plass, Pavlo Lutsik
2024 J jnl
scMaui: a widely applicable deep learning framework for single-cell multiomics integration in the presence of batch effects and missing data.
BMC Bioinform.
Yunhee Jeong, Jonathan Ronen, Wolfgang Kopp, Pavlo Lutsik, Altuna Akalin
2022 J jnl
Systematic evaluation of cell-type deconvolution pipelines for sequencing-based bulk DNA methylomes.
Briefings Bioinform.
Yunhee Jeong, Lisa Barros de Andrade e Sousa, Dominik Thalmeier, Reka Toth, Marlene Ganslmeier, Kersten Breuer, Christoph Plass, Pavlo Lutsik
2021 J jnl
Methrix: an R/Bioconductor package for systematic aggregation and analysis of bisulfite sequencing data.
Bioinform.
Anand Mayakonda, Maximilian Schönung, Joschka Hey, Rajbir Nath Batra, Clarissa Feuerstein-Akgoz, Kristin Köhler, Daniel B. Lipka, Rocio Sotillo, Christoph Plass, Pavlo Lutsik, Reka Toth
2020 J jnl
Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software.
BMC Bioinform.
Clémentine Decamps, Florian Privé, Raphael Bacher, Daniel Jost, Arthur Waguet, Eugene Andres Houseman, Eugene Lurie, Pavlo Lutsik, Aleksandar Milosavljevic, Michael Scherer, Michael G. B. Blum, Magali Richard
2015 J jnl
Identification and analysis of methylation call differences between bisulfite microarray and bisulfite sequencing data with statistical learning techniques.
BMC Bioinform.
Matthias Döring, Gilles Gasparoni, Jasmin Gries, Karl Nordström, Pavlo Lutsik, Jörn Walter, Nico Pfeifer
2014 J jnl
AKSmooth: Enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.
J. Bioinform. Comput. Biol.
Junfang Chen, Pavlo Lutsik, Ruslan Akulenko, Jörn Walter, Volkhard Helms
2014 J jnl
BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives.
Nucleic Acids Res.
Daniel Becker, Pavlo Lutsik, Peter Ebert, Christoph Bock, Thomas Lengauer, Jörn Walter
2014 J jnl
Matrix factorization with Binary Components.
CoRR
Martin Slawski, Matthias Hein, Pavlo Lutsik
2013 — conf
Matrix factorization with binary components.
NIPS
Martin Slawski, Matthias Hein, Pavlo Lutsik
2011 J jnl
BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing.
Nucleic Acids Res.
Pavlo Lutsik, Lars Feuerbach, Julia Arand, Thomas Lengauer, Jörn Walter, Christoph Bock