Pavel V. Baranov

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2021 J jnl
Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data.
Nucleic Acids Res.
Stephen J. Kiniry, Ciara E. Judge, Audrey M. Michel, Pavel V. Baranov
2019 J jnl
Trips-Viz: a transcriptome browser for exploring Ribo-Seq data.
Nucleic Acids Res.
Stephen J. Kiniry, Patrick B. F. O'Connor, Audrey M. Michel, Pavel V. Baranov
2018 J jnl
GWIPS-viz: 2018 update.
Nucleic Acids Res.
Audrey M. Michel, Stephen J. Kiniry, Patrick B. F. O'Connor, James P. A. Mullan, Pavel V. Baranov
2018 J jnl
Improving data workflow systems with cloud services and use of open data for bioinformatics research.
Briefings Bioinform.
Md. Rezaul Karim, Audrey M. Michel, Achille Zappa, Pavel V. Baranov, Ratnesh Sahay, Dietrich Rebholz-Schuhmann
2014 J jnl
Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning.
BMC Bioinform.
Audrey M. Michel, Dmitry E. Andreev, Pavel V. Baranov
2014 J jnl
GWIPS-viz: development of a ribo-seq genome browser.
Nucleic Acids Res.
Audrey M. Michel, Gearoid Fox, Anmol M. Kiran, Christof De Bo, Patrick B. F. O'Connor, Stephen M. Heaphy, James P. A. Mullan, Claire A. Donohue, Desmond G. Higgins, Pavel V. Baranov
2013 J jnl
Darned in 2013: inclusion of model organisms and linking with Wikipedia.
Nucleic Acids Res.
Anmol M. Kiran, John J. O'Mahony, Komal Sanjeev, Pavel V. Baranov
2013 J jnl
GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences.
Nucleic Acids Res.
Ivan Antonov, Pavel V. Baranov, Mark Borodovsky
2013 J jnl
rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments.
Bioinform.
Patrick B. F. O'Connor, Gene-Wei Li, Jonathan S. Weissman, John F. Atkins, Pavel V. Baranov
2012 J jnl
CodonLogo: a sequence logo-based viewer for codon patterns.
Bioinform.
Virag Sharma, David P. Murphy, Gregory M. Provan, Pavel V. Baranov
2010 J jnl
DARNED: a DAtabase of RNa EDiting in humans.
Bioinform.
Anmol M. Kiran, Pavel V. Baranov
2010 J jnl
Recode-2: new design, new search tools, and many more genes.
Nucleic Acids Res.
Michaël Bekaert, Andrew E. Firth, Yan Zhang, Vadim N. Gladyshev, John F. Atkins, Pavel V. Baranov
2008 J jnl
Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs.
BMC Bioinform.
Michaël Bekaert, Ivaylo P. Ivanov, John F. Atkins, Pavel V. Baranov
2006 J jnl
ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting.
Bioinform.
Michaël Bekaert, John F. Atkins, Pavel V. Baranov
2003 J jnl
RECODE 2003.
Nucleic Acids Res.
Pavel V. Baranov, Olga L. Gurvich, Andrew W. Hammer, Raymond F. Gesteland, John F. Atkins
2001 J jnl
RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression.
Nucleic Acids Res.
Pavel V. Baranov, Olga L. Gurvich, Olivier Fayet, Marie Françoise Prère, W. Allen Miller, Raymond F. Gesteland, John F. Atkins, Michael C. Giddings
1999 J jnl
The Database of Ribosomal Cross-links: an update.
Nucleic Acids Res.
Pavel V. Baranov, Andrew V. Kubarenko, Olga L. Gurvich, Tatyana A. Shamolina, Richard Brimacombe
1998 J jnl
The Database of Ribosomal Cross links (DRC).
Nucleic Acids Res.
Pavel V. Baranov, Petr V. Sergiev, Olga A. Dontsova, Alexey A. Bogdanov, Richard Brimacombe