Pavel A. Pevzner

163 papers A* 7A 5B 45C 10Misc 5Journal 78Unranked 11

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	GenomeDecoder: inferring segmental duplications in highly repetitive genomic regions. Bioinform. Zhenmiao Zhang, Ishaan Gupta, Pavel A. Pevzner
2022	J	`jnl`	Michael Waterman's Contributions to Computational Biology and Bioinformatics. J. Comput. Biol. Pavel A. Pevzner, Martin Vingron, Christian M. Reidys, Fengzhu Sun, Sorin Istrail
2022	J	`jnl`	Special Issue: Professor Michael Waterman's 80th Birthday, Part 1. J. Comput. Biol. Sorin Istrail, Pavel A. Pevzner, Fengzhu Sun, Martin Vingron
2021	J	`jnl`	CentromereArchitect: inference and analysis of the architecture of centromeres. Bioinform. Tatiana Dvorkina, Olga Kunyavskaya, Andrey V. Bzikadze, Ivan V. Alexandrov, Pavel A. Pevzner
2021	J	`jnl`	Trace Reconstruction Problems in Computational Biology. IEEE Trans. Inf. Theory Vinnu Bhardwaj, Pavel A. Pevzner, Cyrus Rashtchian, Yana Safonova
2020	J	`jnl`	Automated analysis of immunosequencing datasets reveals novel immunoglobulin D genes across diverse species. PLoS Comput. Biol. Vinnu Bhardwaj, Massimo Franceschetti, Ramesh Rao, Pavel A. Pevzner, Yana Safonova
2020	J	`jnl`	Metaviral SPAdes: assembly of viruses from metagenomic data. Bioinform. Dmitry Antipov, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner
2020	B	`conf`	MosaicFlye: Resolving Long Mosaic Repeats Using Long Reads. RECOMB Anton Bankevich, Pavel A. Pevzner
2020	J	`jnl`	TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats. Bioinform. Alla Mikheenko, Andrey V. Bzikadze, Alexey A. Gurevich, Karen H. Miga, Pavel A. Pevzner
2020	J	`jnl`	The string decomposition problem and its applications to centromere analysis and assembly. Bioinform. Tatiana Dvorkina, Andrey V. Bzikadze, Pavel A. Pevzner
2020	J	`jnl`	Trace Reconstruction Problems in Computational Biology. CoRR Vinnu Bhardwaj, Pavel A. Pevzner, Cyrus Rashtchian, Yana Safonova
2019	—	`conf`	Bioinformatics: a Servant or the Queen of Molecular Biology? BIBM Pavel A. Pevzner
2019	B	`conf`	De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments. RECOMB Bahar Behsaz, Hosein Mohimani, Alexey A. Gurevich, Andrey D. Prjibelski, Mark F. Fisher, Larry Smarr, Pieter C. Dorrestein, Joshua S. Mylne, Pavel A. Pevzner
2019	J	`jnl`	cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs. Bioinform. Ivan Tolstoganov, Anton Bankevich, Zhoutao Chen, Pavel A. Pevzner
2018	B	`conf`	Assembly of Long Error-Prone Reads Using Repeat Graphs. RECOMB Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin, Pavel A. Pevzner
2018	B	`conf`	Long Reads Enable Accurate Estimates of Complexity of Metagenomes. RECOMB Anton Bankevich, Pavel A. Pevzner
2017	B	`conf`	Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Datasets. RECOMB Alexander Shlemov, Sergey Bankevich, Andrey V. Bzikadze, Yana Safonova, Pavel A. Pevzner
2017	J	`jnl`	Single-molecule protein identification by sub-nanopore sensors. PLoS Comput. Biol. Mikhail Kolmogorov, Eamonn Kennedy, Zhuxin Dong, Gregory Timp, Pavel A. Pevzner
2016	B	`conf`	Assembly of Long Error-Prone Reads Using de Bruijn Graphs. RECOMB Yu Lin, Max W. Shen, Jeffrey Yuan, Mark Chaisson, Pavel A. Pevzner
2016	J	`jnl`	Assembly of long error-prone reads using de Bruijn graphs. Proc. Natl. Acad. Sci. USA Yu Lin, Jeffrey Yuan, Mikhail Kolmogorov, Max W. Shen, Mark Chaisson, Pavel A. Pevzner
2016	J	`jnl`	Immunoglobulin Classification Using the Colored Antibody Graph. J. Comput. Biol. Stefano Bonissone, Pavel A. Pevzner
2016	J	`jnl`	Single-Molecule Protein Identification by Sub-Nanopore Sensors. CoRR Mikhail Kolmogorov, Eamonn Kennedy, Zhuxin Dong, Gregory Timp, Pavel A. Pevzner
2016	J	`jnl`	Top-down analysis of protein samples by Bioinform. Kira Vyatkina, Si Wu, Lennard J. Dekker, Martijn M. VanDuijn, Xiaowen Liu, Nikola Tolic, Theo M. Luider, Ljiljana Pasa-Tolic, Pavel A. Pevzner
2016	J	`jnl`	hybridSPAdes: an algorithm for hybrid assembly of short and long reads. Bioinform. Dmitry Antipov, Anton I. Korobeynikov, Jeffrey S. McLean, Pavel A. Pevzner
2016	B	`conf`	metaSPAdes: A New Versatile de novo Metagenomics Assembler. RECOMB Sergey Nurk, Dmitry Meleshko, Anton I. Korobeynikov, Pavel A. Pevzner
2016	J	`jnl`	plasmidSPAdes: assembling plasmids from whole genome sequencing data. Bioinform. Dmitry Antipov, Nolan Hartwick, Max W. Shen, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner
2015	J	`jnl`	Assembling short reads from jumping libraries with large insert sizes. Bioinform. Irina Vasilinetc, Andrey D. Prjibelski, Alexey A. Gurevich, Anton I. Korobeynikov, Pavel A. Pevzner
2015	J	`jnl`	IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Bioinform. Yana Safonova, Stefano Bonissone, Eugene Kurpilyansky, Ekaterina Starostina, Alla L. Lapidus, Jeremy Stinson, Laura DePalatis, Wendy Sandoval, Jennie Lill, Pavel A. Pevzner
2015	B	`conf`	Immunoglobulin Classification Using the Colored Antibody Graph. RECOMB Stefano Bonissone, Pavel A. Pevzner
2015	J	`jnl`	Life after MOOCs. Commun. ACM Phillip E. C. Compeau, Pavel A. Pevzner
2015	J	`jnl`	dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. J. Comput. Biol. Yana Safonova, Anton Bankevich, Pavel A. Pevzner
2014	B	`ed.`	Combinatorial Pattern Matching - 25th Annual Symposium, CPM 2014, Moscow, Russia, June 16-18, 2014. Proceedings CPM Alexander S. Kulikov, Sergei O. Kuznetsov, Pavel A. Pevzner
2014	J	`jnl`	ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinform. Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner
2014	C	`conf`	Manifold de Bruijn Graphs. WABI Yu Lin, Pavel A. Pevzner
2014	B	`conf`	dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. RECOMB Yana Safonova, Anton Bankevich, Pavel A. Pevzner
2013	B	`conf`	Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. RECOMB Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2013	J	`jnl`	Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. J. Comput. Biol. Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2013	B	`conf`	Identification of Ultramodified Proteins Using Top-Down Spectra. RECOMB Xiaowen Liu, Shawna Hengel, Si Wu, Nikola Tolic, Ljiljana Pasa-Tolic, Pavel A. Pevzner
2013	J	`jnl`	MORPH-PRO: a novel algorithm and web server for protein morphing. Algorithms Mol. Biol. Natalie Castellana, Andrey Lushnikov, Piotr Rotkiewicz, Natasha Sefcovic, Pavel A. Pevzner, Adam Godzik, Kira Vyatkina
2013	J	`jnl`	Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. J. Comput. Biol. Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
2013	B	`conf`	UniNovo: A Universal Tool for de Novo Peptide Sequencing. RECOMB Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner
2013	J	`jnl`	UniNovo: a universal tool for Bioinform. Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner
2012	C	`conf`	From de Bruijn Graphs to Rectangle Graphs for Genome Assembly. WABI Nikolay Vyahhi, Alex Pyshkin, Son K. Pham, Pavel A. Pevzner
2012	—	`conf`	Keynote: De novo sequencing of novel peptide antibiotics by tandem mass spectrometry. ICCABS Pavel A. Pevzner
2012	C	`conf`	MORPH-PRO: A Novel Algorithm and Web Server for Protein Morphing. WABI Natalie Castellana, Andrey Lushnikov, Piotr Rotkiewicz, Natasha Sefcovic, Pavel A. Pevzner, Adam Godzik, Kira Vyatkina
2012	C	`conf`	MS-DPR: An Algorithm for Computing Statistical Significance of Spectral Identifications of Non-linear Peptides. WABI Hosein Mohimani, Sangtae Kim, Pavel A. Pevzner
2012	B	`conf`	Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. RECOMB Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev
2012	J	`jnl`	SEQuel: improving the accuracy of genome assemblies. Bioinform. Roy Ronen, Christina Boucher, Hamidreza Chitsaz, Pavel A. Pevzner
2012	J	`jnl`	SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. J. Comput. Biol. Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2011	B	`conf`	Blocked Pattern Matching Problem and Its Applications in Proteomics. RECOMB Julio Ng, Amihood Amir, Pavel A. Pevzner
2011	J	`jnl`	Error correction of high-throughput sequencing datasets with non-uniform coverage. Bioinform. Paul Medvedev, Eric Scott, Boyko Kakaradov, Pavel A. Pevzner
2011	B	`conf`	Multiplex De Novo Sequencing of Peptide Antibiotics. RECOMB Hosein Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudêncio, William Fenical, Pieter C. Dorrestein, Pavel A. Pevzner
2011	J	`jnl`	Multiplex De Novo Sequencing of Peptide Antibiotics. J. Comput. Biol. Hosein Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudêncio, William Fenical, Pieter C. Dorrestein, Pavel A. Pevzner
2011	B	`conf`	Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. RECOMB Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner
2011	J	`jnl`	Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. J. Comput. Biol. Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner
2011	J	`jnl`	Preface: 2 J. Comput. Biol. Pavel A. Pevzner, Ron Shamir
2010	J	`jnl`	DRIMM-Synteny: decomposing genomes into evolutionary conserved segments. Bioinform. Son K. Pham, Pavel A. Pevzner
2010	J	`jnl`	Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications. Commun. Inf. Syst. Max A. Alekseyev, Qian Peng, Pavel A. Pevzner, Glenn Tesler
2010	B	`conf`	Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra. RECOMB Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner
2010	—	`conf`	Limited Lifespan of Fragile Regions in Mammalian Evolution. RECOMB-CG Max A. Alekseyev, Pavel A. Pevzner
2010	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff
2009	C	`conf`	Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes. WABI Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner
2009	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff
2008	B	`conf`	De Novo Sequencing of Nonribosomal Peptides. RECOMB Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner
2008	J	`jnl`	Multi-break rearrangements and chromosomal evolution. Theor. Comput. Sci. Max A. Alekseyev, Pavel A. Pevzner
2008	A	`conf`	Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. ISMB Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner
2007	J	`jnl`	Are There Rearrangement Hotspots in the Human Genome? PLoS Comput. Biol. Max A. Alekseyev, Pavel A. Pevzner
2007	J	`jnl`	Colored de Bruijn Graphs and the Genome Halving Problem. IEEE ACM Trans. Comput. Biol. Bioinform. Max A. Alekseyev, Pavel A. Pevzner
2007	J	`jnl`	Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. IEEE ACM Trans. Comput. Biol. Bioinform. Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang
2007	J	`jnl`	Preface. Discret. Appl. Math. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
2007	B	`conf`	Protein Identification via Spectral Networks Analysis. APBC Pavel A. Pevzner
2007	J	`jnl`	Protein identification by spectral networks analysis. Proc. Natl. Acad. Sci. USA Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner
2007	C	`conf`	Shotgun Protein Sequencing. WABI Pavel A. Pevzner
2007	J	`jnl`	Special issue on computational molecular biology. J. Comput. Syst. Sci. Richard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir
2007	J	`jnl`	Whole Genome Duplications and Contracted Breakpoint Graphs. SIAM J. Comput. Max A. Alekseyev, Pavel A. Pevzner
2007	A*	`conf`	Whole genome duplications, multi-break rearrangements, and genome halving problem. SODA Max A. Alekseyev, Pavel A. Pevzner
2006	B	`conf`	A New Approach to Protein Identification. RECOMB Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner
2006	B	`conf`	Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. APBC Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner
2006	—	`conf`	Comparative genomics reveals unusually long motifs in mammalian genomes. ISMB (Supplement of Bioinformatics) Neil Christopher Jones, Pavel A. Pevzner
2006	J	`jnl`	Microinversions in mammalian evolution. Proc. Natl. Acad. Sci. USA Mark Chaisson, Benjamin J. Raphael, Pavel A. Pevzner
2006	J	`jnl`	Modeling and Characterization of Multi-charge Mass Spectra for Peptide Sequencing. J. Bioinform. Comput. Biol. Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner
2006	J	`jnl`	Representing and comparing protein structures as paths in three-dimensional space. BMC Bioinform. Degui Zhi, S. Sri Krishna, Haibo Cao, Pavel A. Pevzner, Adam Godzik
2006	B	`ed.`	Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings RECOMB Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2006	J	`jnl`	The Fragile Breakage versus Random Breakage Models of Chromosome Evolution. PLoS Comput. Biol. Qian Peng, Pavel A. Pevzner, Glenn Tesler
2005	J	`jnl`	Guest Editors' foreword. J. Comput. Syst. Sci. Richard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir
2005	—	`conf`	Identification of Post-Translational Modifications via Blind Search of Mass-Spectra. CSB Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A. Pevzner
2005	B	`conf`	Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry. RECOMB Ari Frank, Stephen Tanner, Pavel A. Pevzner
2005	B	`ed.`	Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings RECOMB Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2004	J	`jnl`	Educating biologists in the 21st century: bioinformatics scientists versus bioinformatics technicians. Bioinform. Pavel A. Pevzner
2004	J	`jnl`	Fragment assembly with short reads. Bioinform. Mark Chaisson, Pavel A. Pevzner, Haixu Tang
2004	—	`conf`	Genome Halving Problem Revisited. FSTTCS Max A. Alekseyev, Pavel A. Pevzner
2004	—	`conf`	Reconstructing tumor amplisomes. ISMB/ECCB (Supplement of Bioinformatics) Benjamin J. Raphael, Pavel A. Pevzner
2004	J	`jnl`	Scalable Heuristics for Design of DNA Probe Arrays. J. Comput. Biol. Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
2003	B	`conf`	Engineering a scalable placement heuristic for DNA probe arrays. RECOMB Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
2003	C	`conf`	Finding subtle motifs by branching from sample strings. ECCB Alkes L. Price, Sriram Ramabhadran, Pavel A. Pevzner
2003	Misc	`conf`	Genome-Wide Analysis of Bacterial Promoter Regions. Pacific Symposium on Biocomputing Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner
2003	B	`ed.`	Proceedings of the Sventh Annual International Conference on Computational Biology, RECOMB 2003, Berlin, Germany, April 10-13, 2003 RECOMB Martin Vingron, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, Webb Miller
2003	C	`conf`	Reconstructing tumor genome architectures. ECCB Benjamin J. Raphael, Stanislav Volik, Colin C. Collins, Pavel A. Pevzner
2003	B	`conf`	Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited. RECOMB Pavel A. Pevzner, Glenn Tesler
2002	C	`conf`	Border Length Minimization in DNA Array Design. WABI Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
2002	Misc	`conf`	EULER-PCR: Finishing Experiments for Repeat Resolution. Pacific Symposium on Biocomputing Zufar Mulyukov, Pavel A. Pevzner
2002	Misc	`conf`	Finding Weak Motifs in DNA Sequences. Pacific Symposium on Biocomputing Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner
2002	A	`conf`	Finding composite regulatory patterns in DNA sequences. ISMB Eleazar Eskin, Pavel A. Pevzner
2002	B	`conf`	Finding motifs in the twilight zone. RECOMB Uri Keich, Pavel A. Pevzner
2002	J	`jnl`	Finding motifs in the twilight zone. Bioinform. Uri Keich, Pavel A. Pevzner
2002	J	`jnl`	Foreword. J. Comput. Syst. Sci. Ming Li, Pavel A. Pevzner, Ron Shamir
2002	B	`ed.`	Proceedings of the Sixth Annual International Conference on Computational Biology, RECOMB 2002, Washington, DC, USA, April 18-21, 2002 RECOMB Gene Myers, Sridhar Hannenhalli, David Sankoff, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2002	A	`conf`	Splicing graphs and EST assembly problem. ISMB Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner
2002	J	`jnl`	U Subtle motifs: defining the limits of motif finding algorithms. Bioinform. Uri Keich, Pavel A. Pevzner
2001	B	`conf`	A new approach to fragment assembly in DNA sequencing. RECOMB Pavel A. Pevzner, Haixu Tang, Michael S. Waterman
2001	B	`conf`	A new approach to sequence comparison: normalized sequence alignment. RECOMB Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner
2001	J	`jnl`	A new approach to sequence comparison: normalized sequence alignment. Bioinform. Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner
2001	—	`conf`	Fragment assembly with double-barreled data. ISMB (Supplement of Bioinformatics) Pavel A. Pevzner, Haixu Tang
2001	J	`jnl`	The Complexity of Gene Placement. J. Algorithms Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk
2000	A	`conf`	Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. ISMB Pavel A. Pevzner, Sing-Hoi Sze
2000	—	`book`	Computational molecular biology - an algorithmic approach. Pavel A. Pevzner
2000	J	`jnl`	Foreword. Discret. Appl. Math. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
2000	J	`jnl`	Mutation-Tolerant Protein Identification by Mass Spectrometry. J. Comput. Biol. Pavel A. Pevzner, Vlado Dancík, Chris L. Tang
2000	B	`conf`	Mutation-tolerant protein identification by mass-spectrometry. RECOMB Pavel A. Pevzner, Vlado Dancík, Chris L. Tang
2000	B	`ed.`	Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, Tokyo, Japan, April 8-11, 2000 RECOMB Ron Shamir, Satoru Miyano, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
1999	J	`jnl`	De Novo Peptide Sequencing via Tandem Mass Spectrometry. J. Comput. Biol. Vlado Dancík, Theresa A. Addona, Karl R. Clauser, James E. Vath, Pavel A. Pevzner
1999	A	`conf`	Fidelity Probes for DNA Arrays. ISMB Earl Hubbell, Pavel A. Pevzner
1999	B	`ed.`	Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, RECOMB 1999, Lyon, France, April 11-14, 1999 RECOMB Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
1999	A*	`conf`	The Complexity of Gene Placement. SODA Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk
1999	J	`jnl`	Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals. J. ACM Sridhar Hannenhalli, Pavel A. Pevzner
1998	J	`jnl`	Algorithms and software for support of gene identification experiments. Bioinform. Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner
1998	J	`jnl`	Foreword. Discret. Appl. Math. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
1998	B	`ed.`	Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, RECOMB 1998, New York, NY, USA, March 22-25, 1998 RECOMB Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
1998	C	`conf`	SST versus EST in Gene Recognition (Invited Paper). SPIRE Andrey A. Mironov, Pavel A. Pevzner
1998	J	`jnl`	Sorting by Transpositions. SIAM J. Discret. Math. Vineet Bafna, Pavel A. Pevzner
1997	J	`jnl`	Approximation Algorithms for Multiple Sequence Alignment. Theor. Comput. Sci. Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner
1997	J	`jnl`	Emerging opportunities for theoretical computer science. SIGACT News Alfred V. Aho, David S. Johnson, Richard M. Karp, S. Rao Kosaraju, Catherine C. McGeoch, Christos H. Papadimitriou, Pavel A. Pevzner
1997	—	`conf`	Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes. German Conference on Bioinformatics Guorong Xu, Sing-Hoi Sze, Cheng-Pin Liu, Pavel A. Pevzner, Norman Arnheim
1997	J	`jnl`	Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment. J. Comput. Biol. Sing-Hoi Sze, Pavel A. Pevzner
1997	B	`conf`	Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. RECOMB Sing-Hoi Sze, Pavel A. Pevzner
1997	J	`jnl`	Selected Papers from RECOMB'97 - Preface. J. Comput. Biol. Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner
1997	J	`jnl`	Software for DNA sequencing by hybridization. Comput. Appl. Biosci. I. Belyi, Pavel A. Pevzner
1996	J	`jnl`	Genome Rearrangements and Sorting by Reversals. SIAM J. Comput. Vineet Bafna, Pavel A. Pevzner
1996	J	`jnl`	Positional sequencing by hybridization. Comput. Appl. Biosci. Sridhar Hannenhalli, William Feldman, Herbert F. Lewis, Steven Skiena, Pavel A. Pevzner
1996	B	`conf`	Spliced Alignment: A New Approach to Gene Recognition. CPM Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner
1996	A*	`conf`	To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution). SODA Sridhar Hannenhalli, Pavel A. Pevzner
1995	J	`jnl`	DNA Physical Mapping and Alternating Eulerian Cycles in Colored Graphs. Algorithmica Pavel A. Pevzner
1995	J	`jnl`	DNASUN: a package of computer programs for the biotechnology laboratory. Comput. Appl. Biosci. Andrey A. Mironov, N. N. Alexandrov, N. Yu. Bogodarova, A. Grigorjev, V. F. Lebedev, L. V. Lunovskaya, M. E. Truchan, Pavel A. Pevzner
1995	J	`jnl`	Multiple Filtration and Approximate Pattern Matching. Algorithmica Pavel A. Pevzner, Michael S. Waterman
1995	—	`conf`	Open Combinatorial Problems in Computational Molecular Biology. ISTCS Pavel A. Pevzner, Michael S. Waterman
1995	A*	`conf`	Sorting Permutations by Transpositions. SODA Vineet Bafna, Pavel A. Pevzner
1995	—	`ch.`	Towards a Computational Theory of Genome Rearrangements. Computer Science Today Sridhar Hannenhalli, Pavel A. Pevzner
1995	A*	`conf`	Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem). FOCS Sridhar Hannenhalli, Pavel A. Pevzner
1995	A*	`conf`	Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. STOC Sridhar Hannenhalli, Pavel A. Pevzner
1994	B	`conf`	Approximation Algorithms for Multiple Sequence Alignment. CPM Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner
1994	B	`conf`	Parametric Recomuting in Alignment Graphs. CPM Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller
1994	J	`jnl`	Rearrangements of DNA Sequences and SBH. Comput. Chem. Pavel A. Pevzner
1994	B	`conf`	Towards DNA Sequencing Chips. MFCS Pavel A. Pevzner, Robert J. Lipshutz
1993	B	`conf`	A Fast Filtration Algorithm for the Substring Matching Problem. CPM Pavel A. Pevzner, Michael S. Waterman
1993	A*	`conf`	Genome Rearrangements and Sorting by Reversals FOCS Vineet Bafna, Pavel A. Pevzner
1993	B	`conf`	Multiple Sequence Comparison and n-Dimensional Image Reconstruction. CPM Martin Vingron, Pavel A. Pevzner
1992	—	`conf`	DNA Physical Mapping, Flows in Networks and Minimum Cycles Mean in Graphs. Mathematical Methods Of Analysis Of Biopolymer Sequences Pavel A. Pevzner
1992	J	`jnl`	Extendable words in nucleotide sequences. Comput. Appl. Biosci. Mikhail S. Gelfand, C. G. Kozhukhin, Pavel A. Pevzner
1992	B	`conf`	Matrix Longest Common Subsequence Problem, Duality and Hibert Bases. CPM Pavel A. Pevzner, Michael S. Waterman
1992	B	`conf`	Multiple Alignment with Guaranteed Error Bounds and Communication Cost. CPM Pavel A. Pevzner
1992	J	`jnl`	Nucleotide Sequences Versus Markov Models. Comput. Chem. Pavel A. Pevzner
1992	J	`jnl`	Statistical distance between texts and filtration methods in sequence comparison. Comput. Appl. Biosci. Pavel A. Pevzner
1991	J	`jnl`	Genome inhomogeneity is determined mainly by WW and SS dinucleotides. Comput. Appl. Biosci. C. G. Kozhukhin, Pavel A. Pevzner