Paulo C. Carvalho

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2022 J jnl
Increasing confidence in proteomic spectral deconvolution through mass defect.
Bioinform.
Milan A. Clasen, Louise U. Kurt, Marlon D. M. Santos, Diogo B. Lima, Fan Liu, Fábio C. Gozzo, Valmir C. Barbosa, Paulo C. Carvalho
2021 J jnl
Characterizing protein conformers by cross-linking mass spectrometry and pattern recognition.
Bioinform.
Louise U. Kurt, Milan A. Clasen, Marlon D. M. Santos, Eduardo S. B. Lyra, Luana O. Santos, Carlos H. I. Ramos, Diogo B. Lima, Fábio C. Gozzo, Paulo C. Carvalho
2019 J jnl
Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectra.
Bioinform.
Diogo B. Lima, André Ramos Fernandes Da Silva, Mathieu Dupré, Marlon D. M. Santos, Milan A. Clasen, Louise U. Kurt, Priscila F. Aquino, Valmir C. Barbosa, Paulo C. Carvalho, Julia Chamot-Rooke
2019 J jnl
TopoLink: evaluation of structural models using chemical crosslinking distance constraints.
Bioinform.
Allan J. R. Ferrari, Milan A. Clasen, Louise U. Kurt, Paulo C. Carvalho, Fábio C. Gozzo, Leandro Martínez
2017 J jnl
DiagnoProt: a tool for discovery of new molecules by mass spectrometry.
Bioinform.
André Ramos Fernandes Da Silva, Diogo B. Lima, Alejandro Leyva, Rosario Durán, Carlos Batthyany, Priscila F. Aquino, Juliana C. Leal, Jimmy E. Rodriguez, Gilberto B. Domont, Marlon D. M. Santos, Julia Chamot-Rooke, Valmir C. Barbosa, Paulo C. Carvalho
2013 J jnl
Effectively addressing complex proteomic search spaces with peptide spectrum matching.
Bioinform.
Diogo B. Lima, Yasset Pérez-Riverol, Fabio C. S. Nogueira, Gilberto B. Domont, Jesus Noda, Felipe da Veiga Leprevost, Vladimir Besada, Felipe M. G. França, Valmir Carneiro Barbosa, Aniel Sánchez, Paulo C. Carvalho
2012 J jnl
Improving the TFold test for differential shotgun proteomics.
Bioinform.
Paulo C. Carvalho, John R. Yates III, Valmir Carneiro Barbosa
2011 J jnl
Analyzing marginal cases in differential shotgun proteomics.
Bioinform.
Paulo C. Carvalho, Juliana S. G. Fischer, Jonas Perales, John R. Yates III, Valmir Carneiro Barbosa, Elias Bareinboim
2010 J jnl
XDIA: improving on the label-free data-independent analysis.
Bioinform.
Paulo C. Carvalho, Xuemei Han, Tao Xu, Daniel Cociorva, Maria da Gloria Carvalho, Valmir Carneiro Barbosa, John R. Yates III
2009 J jnl
YADA: a tool for taking the most out of high-resolution spectra.
Bioinform.
Paulo C. Carvalho, Tao Xu, Xuemei Han, Daniel Cociorva, Valmir Carneiro Barbosa, John R. Yates III
2008 J jnl
PatternLab for proteomics: a tool for differential shotgun proteomics.
BMC Bioinform.
Paulo C. Carvalho, Juliana S. G. Fischer, Emily I. Chen, John R. Yates III, Valmir Carneiro Barbosa
2005 J jnl
Squid - a simple bioinformatics grid.
BMC Bioinform.
Paulo C. Carvalho, Rafael V. Glória, Antonio Basílio de Miranda, Wim M. Degrave