Paula Jouhten

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
PHA synthase variant design using a conditional variational autoencoder.
PLoS Comput. Biol.
Tuula Tenkanen, Anna Ylinen, Paula Jouhten, Merja Penttilä, Sandra Castillo
2023 J jnl
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts.
BMC Bioinform.
Jakob P. Pettersen, Sandra Castillo, Paula Jouhten, Eivind Almaas
2022 J jnl
Strain design optimization using reinforcement learning.
PLoS Comput. Biol.
Maryam Sabzevari, Sándor Szedmák, Merja Penttilä, Paula Jouhten, Juho Rousu
2014 J jnl
Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species.
PLoS Comput. Biol.
Esa Pitkänen, Paula Jouhten, Jian Hou, Muhammad Fahad Syed, Peter Blomberg, Jana Kludas, Merja Oja, Liisa Holm, Merja Penttilä, Juho Rousu, Mikko Arvas
2014 J jnl
Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae.
BMC Syst. Biol.
Erno Lindfors, Paula Jouhten, Merja Oja, Eija Rintala, Matej Oresic, Merja Penttilä
2010 J jnl
A multi-level study of recombinant Pichia pastoris in different oxygen conditions.
BMC Syst. Biol.
Kristin Baumann, Marc Carnicer, Martin Dragosits, Alexandra Graf, Johannes Stadlmann, Paula Jouhten, Hannu Maaheimo, Brigitte Gasser, Joan Albiol, Diethard Mattanovich, Pau Ferrer
2010 J jnl
Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation.
BMC Syst. Biol.
Subir K. Nandy, Paula Jouhten, Jens Nielsen
2009 J jnl
Inferring branching pathways in genome-scale metabolic networks.
BMC Syst. Biol.
Esa Pitkänen, Paula Jouhten, Juho Rousu
2008 J jnl
An analytic and systematic framework for estimating metabolic flux ratios from
BMC Bioinform.
Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Zamboni, Hannu Maaheimo, Esko Ukkonen
2008 J jnl
Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A.
BMC Syst. Biol.
Paula Jouhten, Eija Rintala, Anne Huuskonen, Anu Tamminen, Mervi Toivari, Marilyn Wiebe, Laura Ruohonen, Merja Penttilä, Hannu Maaheimo
2008 J jnl
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.
J. Integr. Bioinform.
Esa Pitkänen, Arto Åkerlund, Ari Rantanen, Paula Jouhten, Esko Ukkonen