Paul T. Spellman

33 papers A* 3C 1Journal 21Unranked 8
YearRankTypeTitle / Venue / Authors
2023 J jnl
Author Correction: Supervised learning of high-confidence phenotypic subpopulations from single-cell data.
Nat. Mac. Intell.
Tao Ren, Canping Chen, Alexey V. Danilov, Susan Liu, Xiangnan Guan, Shunyi Du, Xiwei Wu, Mara H. Sherman, Paul T. Spellman, Lisa M. Coussens, Andrew C. Adey, Gordon B. Mills, Ling-Yun Wu, Zheng Xia
2023 J jnl
Supervised learning of high-confidence phenotypic subpopulations from single-cell data.
Nat. Mac. Intell.
Tao Ren, Canping Chen, Alexey V. Danilov, Susan Liu, Xiangnan Guan, Shunyi Du, Xiwei Wu, Mara H. Sherman, Paul T. Spellman, Lisa M. Coussens, Andrew C. Adey, Gordon B. Mills, Ling-Yun Wu, Zheng Xia
2021 J jnl
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge.
Patterns
Özgün Babur, Augustin Luna, Anil Korkut, Funda Durupinar, Metin Can Siper, Ugur Dogrusoz, Alvaro Sebastian Vaca Jacome, Ryan Peckner, Karen E. Christianson, Jacob D. Jaffe, Paul T. Spellman, Joseph E. Aslan, Chris Sander, Emek Demir
2020 J jnl
The evolutionary history of 2,658 cancers.
Nat.
Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo
2015 — conf
Predictive sparse morphometric context for classification of histology sections.
ISBI
Hang Chang, Paul T. Spellman, Bahram Parvin
2015 J jnl
Stacked Predictive Sparse Decomposition for Classification of Histology Sections.
Int. J. Comput. Vis.
Hang Chang, Yin Zhou, Alexander Borowsky, Kenneth E. Barner, Paul T. Spellman, Bahram Parvin
2014 A* conf
Classification of Histology Sections via Multispectral Convolutional Sparse Coding.
CVPR
Yin Zhou, Hang Chang, Kenneth E. Barner, Paul T. Spellman, Bahram Parvin
2013 — conf
Characterization of Tissue Histopathology via Predictive Sparse Decomposition and Spatial Pyramid Matching.
MICCAI (2)
Hang Chang, Nandita Nayak, Paul T. Spellman, Bahram Parvin
2013 A* conf
Classification of Tumor Histology via Morphometric Context.
CVPR
Hang Chang, Alexander Borowsky, Paul T. Spellman, Bahram Parvin
2013 — conf
Classification of tumor histopathology via sparse feature learning.
ISBI
Nandita Nayak, Hang Chang, Alexander Borowsky, Paul T. Spellman, Bahram Parvin
2013 — conf
Classification of tumor histopathology via sparse feature learning.
ISBI
Nandita Nayak, Hang Chang, Alexander Borowsky, Paul T. Spellman, Bahram Parvin
2013 J jnl
Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association.
IEEE Trans. Medical Imaging
Hang Chang, Ju Han, Alexander Borowsky, Leandro A. Loss, Joe W. Gray, Paul T. Spellman, Bahram Parvin
2013 J jnl
Methods and challenges in timing chromosomal abnormalities within cancer samples.
Bioinform.
Elizabeth Purdom, Christine Ho, Catherine S. Grasso, Michael Quist, Raymond J. Cho, Paul T. Spellman
2013 A* conf
Stacked Predictive Sparse Coding for Classification of Distinct Regions in Tumor Histopathology.
ICCV
Hang Chang, Yin Zhou, Paul T. Spellman, Bahram Parvin
2012 — conf
Batch-invariant nuclear segmentation in whole mount histology sections.
ISBI
Hang Chang, Leandro A. Loss, Paul T. Spellman, Alexander Borowsky, Bahram Parvin
2012 J jnl
Bayesian Inference of Signaling Network Topology in a Cancer Cell Line.
Bioinform.
Steven M. Hill, Yiling Lu, Jennifer Molina, Laura Heiser, Paul T. Spellman, Terence P. Speed, Joe W. Gray, Gordon B. Mills, Sach Mukherjee
2012 J jnl
Integrating biological knowledge into variable selection: an empirical Bayes approach with an application in cancer biology.
BMC Bioinform.
Steven M. Hill, Richard M. Neve, Nora Bayani, Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, Sach Mukherjee
2012 — conf
Learning invariant features of tumor signatures.
ISBI
Quoc V. Le, Ju Han, Joe W. Gray, Paul T. Spellman, Alexander Borowsky, Bahram Parvin
2012 — conf
Molecular bases of morphometric composition in Glioblastoma multiforme.
ISBI
Ju Han, Hang Chang, Gerald Fontenay, Paul T. Spellman, Alexander Borowsky, Bahram Parvin
2012 J jnl
Multireference Level Set for the Characterization of Nuclear Morphology in Glioblastoma Multiforme.
IEEE Trans. Biomed. Eng.
Hang Chang, Ju Han, Paul T. Spellman, Bahram Parvin
2011 — conf
Comparison of sparse coding and kernel methods for histopathological classification of gliobastoma multiforme.
ISBI
Ju Han, Hang Chang, Leandro A. Loss, Kai Zhang, Frederick L. Baehner, Joe W. Gray, Paul T. Spellman, Bahram Parvin
2011 J jnl
Morphometic analysis of TCGA glioblastoma multiforme.
BMC Bioinform.
Hang Chang, Gerald Fontenay, Ju Han, Ge Cong, Frederick L. Baehner, Joe W. Gray, Paul T. Spellman, Bahram Parvin
2011 J jnl
Parent-specific copy number in paired tumor-normal studies using circular binary segmentation.
Bioinform.
Adam B. Olshen, Henrik Bengtsson, Pierre Neuvial, Paul T. Spellman, Richard A. Olshen, Venkatraman E. Seshan
2010 J jnl
Prediction of epigenetically regulated genes in breast cancer cell lines.
BMC Bioinform.
Leandro A. Loss, Anguraj Sadanandam, Steffen Durinck, Shivani Nautiya, Diane Flaucher, Victoria E. H. Carlton, Martin Moorhead, Yontao Lu, Joe W. Gray, Malek Faham, Paul T. Spellman, Bahram Parvin
2009 J jnl
A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods.
Bioinform.
Henrik Bengtsson, Amrita Ray, Paul T. Spellman, Terence P. Speed
2009 J jnl
GenomeGraphs: integrated genomic data visualization with R.
BMC Bioinform.
Steffen Durinck, James H. Bullard, Paul T. Spellman, Sandrine Dudoit
2009 J jnl
Sparse combinatorial inference with an application in cancer biology.
Bioinform.
Sach Mukherjee, Steven Pelech, Richard M. Neve, Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, Terence P. Speed
2007 C conf
Spectral Decomposition of Signaling Networks.
CIBCB
Bahram Parvin, Nirmalya Ghosh, Laura Heiser, Merrill Knapp, Carolyn L. Talcott, Keith Laderoute, Joe W. Gray, Paul T. Spellman
2006 J jnl
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
BMC Bioinform.
Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert Jr., Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen E. Parkinson, Ugis Sarkans, Catherine A. Ball, Alvis Brazma
2005 J jnl
A Status Report on Mage.
Bioinform.
Paul T. Spellman
2002 J jnl
An open letter to the scientific journals.
Bioinform.
Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank C. P. Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald C. Taylor, Alvis Brazma, John Quackenbush
2001 J jnl
Editorial: The Future of Publishing Microarray Data.
Briefings Bioinform.
Paul T. Spellman
2001 J jnl
The Stanford Microarray Database.
Nucleic Acids Res.
Gavin Sherlock, Tina Hernandez-Boussard, Andrew Kasarskis, Gail Binkley, John C. Matese, Selina S. Dwight, Miroslava Kaloper, Shuai Weng, Heng jin, Catherine A. Ball, Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein, J. Michael Cherry