Paul Stothard

20 papers Misc 1Journal 19
YearRankTypeTitle / Venue / Authors
2023 J jnl
PHASTEST: faster than PHASTER, better than PHAST.
Nucleic Acids Res.
David S. Wishart, Scott Han, Sukanta Saha, Eponine Oler, Harrison Peters, Jason R. Grant, Paul Stothard, Vasuk Gautam
2023 J jnl
PlasMapper 3.0 - a web server for generating, editing, annotating and visualizing publication quality plasmid maps.
Nucleic Acids Res.
David S. Wishart, Leah Ren, Jacques Leong-Sit, Sukanta Saha, Jason R. Grant, Paul Stothard, Upasana Singh, Abby Kropielnicki, Eponine Oler, Harrison Peters, Vasuk Gautam
2023 J jnl
Proksee: in-depth characterization and visualization of bacterial genomes.
Nucleic Acids Res.
Jason R. Grant, Eric Enns, Eric Marinier, Arnab Mandal, Emily K. Herman, Chih-Yu Chen, Morag Graham, Gary H. Van Domselaar, Paul Stothard
2019 J jnl
Visualizing and comparing circular genomes using the CGView family of tools.
Briefings Bioinform.
Paul Stothard, Jason R. Grant, Gary H. Van Domselaar
2015 J jnl
Whole genome SNP genotype piecemeal imputation.
BMC Bioinform.
Yining Wang, Tim Wylie, Paul Stothard, Guohui Lin
2012 J jnl
BacMap: an up-to-date electronic atlas of annotated bacterial genomes.
Nucleic Acids Res.
Joseph A. Cruz, Yifeng Liu, Yongjie Liang, You Zhou, Michael Wilson, Jonathan J. Dennis, Paul Stothard, Gary H. Van Domselaar, David S. Wishart
2011 J jnl
In-depth annotation of SNPs arising from resequencing projects using NGS-SNP.
Bioinform.
Jason R. Grant, Adriano S. Arantes, Xiaoping Liao, Paul Stothard
2010 J jnl
Interactive microbial genome visualization with GView.
Bioinform.
Aaron J. Petkau, Matthew Stuart-Edwards, Paul Stothard, Gary H. Van Domselaar
2010 J jnl
PROSESS: a protein structure evaluation suite and server.
Nucleic Acids Res.
Mark V. Berjanskii, Yongjie Liang, Jianjun Zhou, Peter Tang, Paul Stothard, You Zhou, Joseph A. Cruz, Cam Macdonell, Guohui Lin, Paul Lu, David S. Wishart
2009 J jnl
Most parsimonious haplotype allele sharing determination.
BMC Bioinform.
Zhipeng Cai, Hadi Sabaa, Yining Wang, Randy Goebel, Zhiquan Wang, Jiaofen Xu, Paul Stothard, Guohui Lin
2008 J jnl
PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites.
Nucleic Acids Res.
Dean Cheng, Craig Knox, Nelson Young, Paul Stothard, Sambasivarao Damaraju, David S. Wishart
2008 J jnl
The CGView Server: a comparative genomics tool for circular genomes.
Nucleic Acids Res.
Jason R. Grant, Paul Stothard
2007 Misc conf
Biospider: A Web Server for Automating Metabolome Annotations.
Pacific Symposium on Biocomputing
Craig Knox, Savita Shrivastava, Paul Stothard, Roman Eisner, David S. Wishart
2007 J jnl
HMDB: the Human Metabolome Database.
Nucleic Acids Res.
David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, Anchi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian J. Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russell Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser
2006 J jnl
DrugBank: a comprehensive resource for
Nucleic Acids Res.
David S. Wishart, Craig Knox, Anchi Guo, Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, Jennifer Woolsey
2005 J jnl
BASys: a web server for automated bacterial genome annotation.
Nucleic Acids Res.
Gary H. Van Domselaar, Paul Stothard, Savita Shrivastava, Joseph A. Cruz, Anchi Guo, Xiaoli Dong, Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart
2005 J jnl
BacMap: an interactive picture atlas of annotated bacterial genomes.
Nucleic Acids Res.
Paul Stothard, Gary H. Van Domselaar, Savita Shrivastava, Anchi Guo, Brian O'Neill, Joseph A. Cruz, Michael Ellison, David S. Wishart
2005 J jnl
Circular genome visualization and exploration using CGView.
Bioinform.
Paul Stothard, David S. Wishart
2004 J jnl
PlasMapper: a web server for drawing and auto-annotating plasmid maps.
Nucleic Acids Res.
Xiaoli Dong, Paul Stothard, Ian J. Forsythe, David S. Wishart
2004 J jnl
The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli.
Nucleic Acids Res.
Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani, Paul Stothard, Michael Ellison, David S. Wishart