Paul Kellam

18 papers B 2C 1Journal 12Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data.
BMC Bioinform.
Tanya Golubchik, Lucie Abeler-Dörner, Matthew Hall, Chris Wymant, David G. Bonsall, George Macintyre-Cockett, Laura Thomson, Jared M. Baeten, Connie L. Celum, Ronald Galiwango, Barry Kosloff, Mohammed Limbada, Andrew Mujugira, Nelly R. Mugo, Astrid Gall, François Blanquart, Margreet Bakker, Daniela Bezemer, Swee Hoe Ong, Jan Albert, Norbert Bannert, Jacques Fellay, Barbara Gunsenheimer-Bartmeyer, Huldrych F. Günthard, Pia Kivelä, Roger D. Kouyos, Laurence Meyer, Kholoud Porter, Ard van Sighem, Mark van der Valk, Ben Berkhout, Paul Kellam, Marion Cornelissen, Peter Reiss, Helen Ayles, David N. Burns, Sarah Fidler, Mary Kate Grabowski, Richard J. Hayes, Joshua T. Herbeck, Joseph Kagaayi, Pontiano Kaleebu, Jairam R. Lingappa, Deogratius Ssemwanga, Susan H. Eshleman, Myron S. Cohen, Oliver Ratmann, Oliver Laeyendecker, Christophe Fraser
2017 J jnl
Virus genomes reveal factors that spread and sustained the Ebola epidemic.
Nat.
Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D'Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. G. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo F. Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut
2015 J jnl
IVA: accurate
Bioinform.
Martin Hunt, Astrid Gall, Swee Hoe Ong, Jacqui Brener, Bridget Ferns, Philip J. R. Goulder, Eleni Nastouli, Jacqueline A. Keane, Paul Kellam, Thomas D. Otto
2012 J jnl
Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.
BMC Bioinform.
John P. Archer, Greg Baillie, Simon J. Watson, Paul Kellam, Andrew Rambaut, David L. Robertson
2008 J jnl
Can graph-cutting improve microarray gene expression reconstructions?
Pattern Recognit. Lett.
Karl Fraser, Zidong Wang, Yongmin Li, Paul Kellam, Xiaohui Liu
2008 J jnl
Gene3D: comprehensive structural and functional annotation of genomes.
Nucleic Acids Res.
Corin Yeats, Jonathan G. Lees, Adam James Reid, Paul Kellam, Nigel J. Martin, Xinhui Liu, Christine A. Orengo
2007 B conf
Noise Filtering and Microarray Image Reconstruction Via Chained Fouriers.
IDA
Karl Fraser, Zidong Wang, Yongmin Li, Paul Kellam, Xiaohui Liu
2006 C conf
Aggregating Homologous Protein Families in Evolutionary Reconstructions of Herpesviruses.
CIBCB
Boris G. Mirkin, Renata da Silva Camargo, Trevor I. Fenner, George Loizou, Paul Kellam
2006 — conf
Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering.
CompLife
Michael Hirsch, Allan Tucker, Stephen Swift, Nigel J. Martin, Christine A. Orengo, Paul Kellam, Xiaohui Liu
2005 J jnl
A statistical model for HIV-1 sequence classification using the subtype analyser (STAR).
Bioinform.
Richard E. Myers, Catherine V. Gale, A. Harrison, Yasu Takeuchi, Paul Kellam
2005 J jnl
An experimental evaluation of a loop versus a reference design for two-channel microarrays.
Bioinform.
Veronica Vinciotti, Raya Khanin, Davide D'Alimonte, Xiaohui Liu, N. Cattini, G. Hotchkiss, Giselda Bucca, O. de Jesus, J. Rasaiyaah, Colin P. Smith, Paul Kellam, Ernst Wit
2005 J jnl
Pyramidic Clustering of Large-Scale Microarray Images.
Comput. J.
Paul O'Neill, Karl Fraser, Zidong Wang, Paul Kellam, Joost N. Kok, Xiaohui Liu
2004 — conf
Consensus Clustering and Functional Interpretation of Gene Expression Data.
Spanish Bioinformatics Conference
Paul Kellam, Stephen Swift, Allan Tucker, Veronica Vinciotti, Nigel J. Martin, Christine A. Orengo, Xiaohui Liu
2004 — conf
The Novel Virus Genotyping Tool (STAR) and its Use in Subtyping Human Immunodeficiency Virus Type-1 and Hepatitis B Viruses.
Spanish Bioinformatics Conference
Richard Myers, Catherine V. Gale, Caroline Clark, Julie Bennett, Richard S. Tedder, Ian G. Williams, Paul Kellam
2002 J jnl
A framework for modelling virus gene expression data.
Intell. Data Anal.
Paul Kellam, Xiaohui Liu, Nigel J. Martin, Christine A. Orengo, Stephen Swift, Allan Tucker
2002 J jnl
PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources.
Bioinform.
Adrian J. Shepherd, Nigel J. Martin, Roger G. Johnson, Paul Kellam, Christine A. Orengo
2001 B conf
A Framework for Modelling Short, High-Dimensional Multivariate Time Series: Preliminary Results in Virus Gene Expression Data Analysis.
IDA
Paul Kellam, Xiaohui Liu, Nigel J. Martin, Christine A. Orengo, Stephen Swift, Allan Tucker
2001 J jnl
VIDA: a virus database system for the organization of animal virus genome open reading frames.
Nucleic Acids Res.
M. Mar Albà, David A. Lee, Frances M. G. Pearl, Adrian J. Shepherd, Nigel J. Martin, Christine A. Orengo, Paul Kellam