Paul A. Clemons

13 papers Misc 1Journal 12
YearRankTypeTitle / Venue / Authors
2022 J jnl
Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science.
CoRR
Deepak R. Unni, Sierra A. T. Moxon, Michael Bada, Matthew H. Brush, Richard M. Bruskiewich, Paul A. Clemons, Vlado Dancík, Michel Dumontier, Karamarie Fecho, Gustavo Glusman, Jennifer J. Hadlock, Nomi L. Harris, Arpita Joshi, Tim E. Putman, Guangrong Qin, Stephen A. Ramsey, Kent A. Shefchek, Harold Solbrig, Karthik Soman, Anne E. Thessen, Melissa A. Haendel, Chris Bizon, Christopher J. Mungall
2022 J jnl
Machine Learning on DNA-Encoded Library Count Data Using an Uncertainty-Aware Probabilistic Loss Function.
J. Chem. Inf. Model.
Katherine S. Lim, Andrew G. Reidenbach, Bruce K. Hua, Jeremy W. Mason, Christopher J. Gerry, Paul A. Clemons, Connor W. Coley
2021 J jnl
Machine learning on DNA-encoded library count data using an uncertainty-aware probabilistic loss function.
CoRR
Katherine S. Lim, Andrew G. Reidenbach, Bruce K. Hua, Jeremy W. Mason, Christopher J. Gerry, Paul A. Clemons, Connor W. Coley
2018 J jnl
RWEN: response-weighted elastic net for prediction of chemosensitivity of cancer cell lines.
Bioinform.
Amrita Basu, Ritwik Mitra, Han Liu, Stuart L. Schreiber, Paul A. Clemons
2017 J jnl
CTD2 Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network.
Database J. Biol. Databases Curation
Bülent Arman Aksoy, Vlado Dancík, Kenneth Smith, Jessica N. Mazerik, Zhou Ji, Benjamin E. Gross, Olga Nikolova, Nadia Jaber, Andrea Califano, Stuart L. Schreiber, Daniela S. Gerhard, Leandro Hermida, Subhashini Jagu, Chris Sander, Aris Floratos, Paul A. Clemons
2017 Misc conf
Differential Pathway Dependency Discovery Associated with Drug Response across Cancer Cell Lines.
PSB
Gil Speyer, Divya Mahendra, Hai J. Tran, Jeff Kiefer, Stuart L. Schreiber, Paul A. Clemons, Harshil Dhruv, Michael E. Berens, Seungchan Kim
2015 J jnl
BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types.
Nucleic Acids Res.
E. A. Howe, Andrea De Souza, David L. Lahr, S. Chatwin, Philip Montgomery, B. R. Alexander, Dac-Trung Nguyen, Yasel Cruz, D. A. Stonich, G. Walzer, J. T. Rose, Shaita C. Picard, Zihan Liu, Jamie N. Rose, X. Xiang, Jacob K. Asiedu, D. Durkin, J. Levine, J. J. Yang, Stephan C. Schürer, John C. Braisted, Noel Southall, Mark R. Southern, T. D. Y. Chung, Steve Brudz, C. Tanega, Stuart L. Schreiber, Joshua A. Bittker, Rajarshi Guha, Paul A. Clemons
2014 J jnl
Evolving BioAssay Ontology (BAO): modularization, integration and applications.
J. Biomed. Semant.
Saminda Abeyruwan, Uma D. Vempati, Hande Küçük-McGinty, Ubbo Visser, Amar Koleti, Ahsan Mir, Kunie Sakurai, Caty Chung, Joshua A. Bittker, Paul A. Clemons, Steve Brudz, Anosha Siripala, Arturo J. Morales, Martin Romacker, David Twomey, Svetlana Bureeva, Vance P. Lemmon, Stephan C. Schürer
2013 J jnl
An informatic pipeline for managing high-throughput screening experiments and analyzing data from stereochemically diverse libraries.
J. Comput. Aided Mol. Des.
Carol A. Mulrooney, David L. Lahr, Michael J. Quintin, Willmen Youngsaye, Dennis Moccia, Jacob K. Asiedu, Evan L. Mulligan, Lakshmi B. Akella, Lisa A. Marcaurelle, Philip Montgomery, Joshua A. Bittker, Paul A. Clemons, Steve Brudz, Sivaraman Dandapani, Jeremy R. Duvall, Nicola J. Tolliday, Andrea De Souza
2012 J jnl
Utility-Aware Screening with Clique-Oriented Prioritization.
J. Chem. Inf. Model.
S. Joshua Swamidass, Bradley T. Calhoun, Joshua A. Bittker, Nicole E. Bodycombe, Paul A. Clemons
2011 J jnl
Enhancing the rate of scaffold discovery with diversity-oriented prioritization.
Bioinform.
Sanjay Joshua Swamidass, Bradley T. Calhoun, Joshua A. Bittker, Nicole E. Bodycombe, Paul A. Clemons
2009 J jnl
Alpha Shapes Applied to Molecular Shape Characterization Exhibit Novel Properties Compared to Established Shape Descriptors.
J. Chem. Inf. Model.
J. Anthony Wilson, Andreas Bender, Taner Kaya, Paul A. Clemons
2005 J jnl
SpectralNET - an application for spectral graph analysis and visualization.
BMC Bioinform.
Joshua J. Forman, Paul A. Clemons, Stuart L. Schreiber, Stephen J. Haggarty