Patryk Orzechowski

45 papers A 1B 1C 1Misc 2Journal 22Unranked 18
YearRankTypeTitle / Venue / Authors
2025 — conf
MentalChat16K: A Benchmark Dataset for Conversational Mental Health Assistance.
KDD (2)
Jia Xu, Tianyi Wei, Bojian Hou, Patryk Orzechowski, Shu Yang, Ruochen Jin, Rachael Paulbeck, Joost B. Wagenaar, George Demiris, Li Shen
2025 J jnl
MentalChat16K: A Benchmark Dataset for Conversational Mental Health Assistance.
CoRR
Jia Xu, Tianyi Wei, Bojian Hou, Patryk Orzechowski, Shu Yang, Ruochen Jin, Rachael Paulbeck, Joost B. Wagenaar, George Demiris, Li Shen
2025 J jnl
QOT: Quantized Optimal Transport for sample-level distance matrix in single-cell omics.
Briefings Bioinform.
Zexuan Wang, Qipeng Zhan, Shu Yang, Shizhuo Mu, Jiong Chen, Sumita Garai, Patryk Orzechowski, Joost B. Wagenaar, Li Shen
2024 J jnl
Clustering Alzheimer's Disease Subtypes via Similarity Learning and Graph Diffusion.
CoRR
Tianyi Wei, Shu Yang, Davoud Ataee Tarzanagh, Jingxuan Bao, Jia Xu, Patryk Orzechowski, Joost B. Wagenaar, Qi Long, Li Shen
2024 — conf
EsmTemp - Transfer Learning Approach for Predicting Protein Thermostability.
ICCS (3)
Adam Sulek, Jakub Jonczyk, Patryk Orzechowski, Ahmed Abdeen Hamed, Marek Wodzinski
2024 J jnl
Pennsieve: A Collaborative Platform for Translational Neuroscience and Beyond.
CoRR
Zack Goldblum, Zhongchuan Xu, Haoer Shi, Patryk Orzechowski, Jamaal Spence, Kathryn A. Davis, Brian Litt, Nishant Sinha, Joost B. Wagenaar
2022 — conf
A comparative study of GP-based and state-of-the-art classifiers on a synthetic machine learning benchmark.
GECCO Companion
Patryk Orzechowski, Pawel Renc, William G. La Cava, Jason H. Moore, Arkadiusz Sitek, Jaroslaw Was, Joost B. Wagenaar
2022 J jnl
Applying Autonomous Hybrid Agent-based Computing to Difficult Optimization Problems.
CoRR
Mateusz Godzik, Jacek Dajda, Marek Kisiel-Dorohinicki, Aleksander Byrski, Leszek Rutkowski, Patryk Orzechowski, Joost B. Wagenaar, Jason H. Moore
2022 J jnl
Applying autonomous hybrid agent-based computing to difficult optimization problems.
J. Comput. Sci.
Mateusz Godzik, Jacek Dajda, Marek Kisiel-Dorohinicki, Aleksander Byrski, Leszek Rutkowski, Patryk Orzechowski, Joost B. Wagenaar, Jason H. Moore
2022 — conf
Automated Affect and Emotion Recognition from Cardiovascular Signals - A Systematic Overview Of The Field.
HICSS
Pawel Jemiolo, Dawid Storman, Maria Mamica, Mateusz Szymkowski, Patryk Orzechowski
2022 J jnl
Benchmarking AutoML algorithms on a collection of synthetic classification problems.
CoRR
Pedro Henrique Ribeiro, Patryk Orzechowski, Joost B. Wagenaar, Jason H. Moore
2021 — conf
Contemporary Symbolic Regression Methods and their Relative Performance.
NeurIPS Datasets and Benchmarks
William G. La Cava, Patryk Orzechowski, Bogdan Burlacu, Fabrício Olivetti de França, Marco Virgolin, Ying Jin, Michael Kommenda, Jason H. Moore
2021 J jnl
Contemporary Symbolic Regression Methods and their Relative Performance.
CoRR
William G. La Cava, Patryk Orzechowski, Bogdan Burlacu, Fabrício Olivetti de França, Marco Virgolin, Ying Jin, Michael Kommenda, Jason H. Moore
2021 J jnl
EBIC.JL - an Efficient Implementation of Evolutionary Biclustering Algorithm in Julia.
CoRR
Pawel Renc, Patryk Orzechowski, Aleksander Byrski, Jaroslaw Was, Jason H. Moore
2021 — conf
EBIC.JL: an efficient implementation of evolutionary biclustering algorithm in Julia.
GECCO Companion
Pawel Renc, Patryk Orzechowski, Aleksander Byrski, Jaroslaw Was, Jason H. Moore
2021 J jnl
Generative and reproducible benchmarks for comprehensive evaluation of machine learning classifiers.
CoRR
Patryk Orzechowski, Jason H. Moore
2021 — conf
Rapid prototyping of evolution-driven biclustering methods in Julia.
GECCO Companion
Pawel Renc, Patryk Orzechowski, Aleksander Byrski, Jaroslaw Was, Jason H. Moore
2021 — conf
Socio-cognitive Evolution Strategies.
ICCS (2)
Aleksandra Urbanczyk, Bartosz Nowak, Patryk Orzechowski, Jason H. Moore, Marek Kisiel-Dorohinicki, Aleksander Byrski
2020 B conf
Benchmarking Manifold Learning Methods on a Large Collection of Datasets.
EuroGP
Patryk Orzechowski, Franciszek Magiera, Jason H. Moore
2020 J jnl
Benchmarking in Optimization: Best Practice and Open Issues.
CoRR
Thomas Bartz-Beielstein, Carola Doerr, Jakob Bossek, Sowmya Chandrasekaran, Tome Eftimov, Andreas Fischbach, Pascal Kerschke, Manuel López-Ibáñez, Katherine M. Malan, Jason H. Moore, Boris Naujoks, Patryk Orzechowski, Vanessa Volz, Markus Wagner, Thomas Weise
2020 — conf
Expanding Polygenic Risk Scores to Include Automatic Genotype Encodings and Gene-gene Interactions.
BIOINFORMATICS
Trang T. Le, Hoyt Gong, Patryk Orzechowski, Elisabetta Manduchi, Jason H. Moore
2019 — conf
EBIC: a scalable biclustering method for large scale data analysis.
GECCO (Companion)
Patryk Orzechowski, Jason H. Moore
2019 J jnl
EBIC: an open source software for high-dimensional and big data analyses.
Bioinform.
Patryk Orzechowski, Jason H. Moore
2019 J jnl
Exploration of a diversity of computational and statistical measures of association for genome-wide genetic studies.
BioData Min.
Elisabetta Manduchi, Patryk Orzechowski, Marylyn D. Ritchie, Jason H. Moore
2019 — conf
Mining a massive RNA-seq dataset with biclustering: are evolutionary approaches ready for big data?
GECCO (Companion)
Patryk Orzechowski, Jason H. Moore
2019 — conf
Strategies for improving performance of evolutionary biclustering algorithm EBIC.
GECCO (Companion)
Patryk Orzechowski, Jason H. Moore
2018 Misc conf
Considerations for automated machine learning in clinical metabolic profiling: Altered homocysteine plasma concentration associated with metformin exposure.
PSB
Alena Orlenko, Jason H. Moore, Patryk Orzechowski, Randal S. Olson, Junmei Cairns, Pedro J. Caraballo, Richard M. Weinshilboum, Liewei Wang, Matthew K. Breitenstein
2018 — conf
EBIC: a next-generation evolutionary-based parallel biclustering method.
GECCO (Companion)
Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore
2018 J jnl
EBIC: an artificial intelligence-based parallel biclustering algorithm for pattern discovery.
CoRR
Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore
2018 J jnl
EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery.
Bioinform.
Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore
2018 J jnl
EBIC: an open source software for high-dimensional and big data biclustering analyses.
CoRR
Patryk Orzechowski, Jason H. Moore
2018 Misc conf
Mapping patient trajectories using longitudinal extraction and deep learning in the MIMIC-III Critical Care Database.
PSB
Brett K. Beaulieu-Jones, Patryk Orzechowski, Jason H. Moore
2018 — conf
Retrieving Impressions from Semantic Memory Modeled with Associative Pulsing Neural Networks.
SSCI
Patryk Orzechowski, Adrian Horzyk, Janusz A. Starzyk, Jason H. Moore
2018 J jnl
Where are we now? A large benchmark study of recent symbolic regression methods.
CoRR
Patryk Orzechowski, William G. La Cava, Jason H. Moore
2018 A conf
Where are we now?: a large benchmark study of recent symbolic regression methods.
GECCO
Patryk Orzechowski, William G. La Cava, Jason H. Moore
2018 J jnl
runibic: a Bioconductor package for parallel row-based biclustering of gene expression data.
Bioinform.
Patryk Orzechowski, Artur Panszczyk, Xiuzhen Huang, Jason H. Moore
2017 — conf
A System for Accessible Artificial Intelligence.
GPTP
Randal S. Olson, Moshe Sipper, William G. La Cava, Sharon Tartarone, Steven Vitale, Weixuan Fu, Patryk Orzechowski, Ryan J. Urbanowicz, John H. Holmes, Jason H. Moore
2017 J jnl
PMLB: A Large Benchmark Suite for Machine Learning Evaluation and Comparison.
CoRR
Randal S. Olson, William G. La Cava, Patryk Orzechowski, Ryan J. Urbanowicz, Jason H. Moore
2017 J jnl
PMLB: a large benchmark suite for machine learning evaluation and comparison.
BioData Min.
Randal S. Olson, William G. La Cava, Patryk Orzechowski, Ryan J. Urbanowicz, Jason H. Moore
2016 — conf
Hybrid Biclustering Algorithms for Data Mining.
EvoApplications (1)
Patryk Orzechowski, Krzysztof Boryczko
2016 J jnl
Propagation-Based Biclustering Algorithm for Extracting Inclusion-Maximal Motifs.
Comput. Informatics
Patryk Orzechowski, Krzysztof Boryczko
2016 C conf
QtBiVis: a software toolbox for visual analysis of biclustering experiment.
FedCSIS
Artur Panszczyk, Patryk Orzechowski
2016 — conf
Text Mining with Hybrid Biclustering Algorithms.
ICAISC (2)
Patryk Orzechowski, Krzysztof Boryczko
2015 J jnl
Rough assessment of GPU capabilities for parallel PCC-based biclustering method applied to microarray data sets.
Bio Algorithms Med Syst.
Patryk Orzechowski, Krzysztof Boryczko
2013 — conf
Proximity Measures and Results Validation in Biclustering - A Survey.
ICAISC (2)
Patryk Orzechowski