Patrick R. Alba

28 papers Misc 12Journal 4Unranked 12

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	A Schema for Extraction of Comprehensive. MedInfo Ivy Cerelia Valerie, Patrick R. Alba, Georgina Kennedy
2025	J	`jnl`	Accelerating Clinical NLP at Scale with a Hybrid Framework with Reduced GPU Demands: A Case Study in Dementia Identification. CoRR Jianlin Shi, Qiwei Gan, Elizabeth Hanchrow, Annie E. Bowles, Johnathan C. Stanley, Adam Bress, Jordana B. Cohen, Patrick R. Alba
2025	—	`conf`	Comparative Analysis of NLP Models for Automatic LOINC Document Ontology Named Entity Recognition in Clinical Note Titles. MedInfo Annie E. Bowles, Qiwei Gan, Elizabeth Hanchrow, Scott L. DuVall, Patrick R. Alba, Jianlin Shi
2025	—	`conf`	Development and Evaluation of Natural Language Processing Methods for Extracting Key Melanoma Pathology Concepts. MedInfo Johnathan C. Stanley, Mengke Hu, Cecelia J. Madison, Jianlin Shi, Tiffany Quilter, Lacy Castleton, Elizabeth E. Hanchrow, Julie A. Lynch, Wesley Y. Yu, Patrick R. Alba
2025	—	`conf`	Enhancing and Disaggregating Native Hawaiian and Pacific Islander (NHPI) Data Using Natural Language Processing and an Expanded Race/Ethnicity Lexicon. MedInfo Benjamin Viernes, Qiwei Gan, Elizabeth Hanchrow, Mengke Hu, Gregorio Coronado, Scott L. DuVall, Kalani Raphael, Patrick R. Alba
2025	—	`conf`	The Best of All Worlds: A Hybrid Approach to Cohort Identification with Rules, Small and Large Language Models. MedInfo Qiwei Gan, Jianlin Shi, Annie E. Bowles, Elizabeth Hanchrow, John Stanley, Mengke Hu, Scott L. DuVall, Patrick R. Alba
2024	J	`jnl`	Strategies for secondary use of real-world clinical and administrative data for outcome ascertainment in pragmatic clinical trials. J. Biomed. Informatics Cynthia Hau, Patricia A. Woods, Amanda S. Guski, Srihari I. Raju, Liang Zhu, Patrick R. Alba, William C. Cushman, Peter A. Glassman, Areef Ishani, Addison A. Taylor, Ryan E. Ferguson, Sarah Leatherman
2023	J	`jnl`	A deep learning approach for medication disposition and corresponding attributes extraction. J. Biomed. Informatics Qiwei Gan, Mengke Hu, Kelly S. Peterson, Hannah Eyre, Patrick R. Alba, Annie E. Bowles, Johnathan C. Stanley, Scott L. DuVall, Jianlin Shi
2023	—	`conf`	An NLP Framework for the Extraction of Concept Measurements from Radiology and Pathology Notes. MedInfo Annie E. Bowles, Cris Perez, Anil Vachani, Jennifer Steltz, Brent Rose, Alex K. Bryant, Hannah Eyre, Scott L. DuVall, Julie A. Lynch, Patrick R. Alba
2023	—	`conf`	Development of a Natural Language Processing System to Identify Clinical Documentation of Electronic Cigarette Use. MedInfo Patrick R. Alba, Qiwei Gan, Mengke Hu, Shu-Hong Zhu, Scott E. Sherman, Scott L. DuVall, Mike Conway
2023	—	`conf`	Toward Real-World Reproducibility: Verifying Value Sets for Clinical Research. MedInfo Scott L. DuVall, Craig G. Parker, Amanda R. Shields, Patrick R. Alba, Julie A. Lynch, Michael E. Matheny, Aaron W. C. Kamauu
2021	Misc	`conf`	Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. AMIA Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson
2021	J	`jnl`	Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. CoRR Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson
2021	Misc	`conf`	Vaping at the VA: Developing an Annotated Corpus of Electronic Cigarette Mentions in Clinical Notes at the Department of Veterans Affairs. AMIA Mike Conway, Patrick R. Alba, Shu-Hong Zhu, Olga V. Patterson
2020	Misc	`conf`	A Decade of Vaping: Identifying Shifts in Clinical Documentation and Terminology in the Department of Veterans Affairs (2010-2020). AMIA Patrick R. Alba, Olga V. Patterson, Mike Conway
2020	Misc	`conf`	Removing barriers to clinical text processing with MedSpaCy. AMIA Hannah Eyre, Olga V. Patterson, Jianlin Shi, Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall
2019	—	`conf`	Automatic Methods to Extract Prescription Status Quality Measures from Unstructured Health Records. MedInfo Patrick R. Alba, Olga V. Patterson, Joshua S. Richman, Scott L. DuVall
2019	—	`conf`	Using Enriched Samples for Semi-Automated Vocabulary Expansion to Identify Rare Events in Clinical Text: Sexual Orientation as a Use Case. MedInfo Kristine E. Lynch, Patrick R. Alba, Benjamin Viernes, Scott L. DuVall
2018	Misc	`conf`	A User-Friendly Interface for Concept Dictionary Expansion Using Word Embeddings and SNOMED-CT. AMIA Alec B. Chapman, Patrick R. Alba, Brian T. Bucher, Scott L. DuVall, Olga V. Patterson
2018	Misc	`conf`	Ankle Brachial Index Extraction System. AMIA Patrick R. Alba, Scott L. DuVall, Daniel Norvell, Kathryn P. Moore, Joseph M. Czerniecki, Olga V. Patterson
2018	Misc	`conf`	Fast and Accurate Adverse Drug Event labeling without a GPU. AMIA Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall, Olga V. Patterson
2018	—	`conf`	Hybrid system for adverse drug event detection. Medication and Adverse Drug Event Detection Alec B. Chapman, Kelly S. Peterson, Patrick R. Alba, Scott L. DuVall, Olga V. Patterson
2017	Misc	`conf`	Pathology Information Extraction in Bladder Cancer Surveillance. AMIA Patrick R. Alba, Scott L. DuVall, Terri Elizabeth Workman, Florian Schroeck, Olga V. Patterson
2016	Misc	`conf`	An Introduction to Natural Language Processing Methods in Clinical Research. AMIA Olga V. Patterson, Patrick R. Alba, Scott L. DuVall
2016	Misc	`conf`	Large Scale Clinical Text Processing and Process Optimization. AMIA Scott L. DuVall, Patrick R. Alba, Olga V. Patterson
2016	Misc	`conf`	The Super Annotator: A Method of Semi-Automated Rare Event Identification for Large Clinical Data Sets. AMIA Patrick R. Alba, Olga V. Patterson, Benjamin Viernes, Daniel W. Denhalter, Nicole Bailey, Andrew Wilson, Aaron W. C. Kamauu, Scott L. DuVall
2015	—	`conf`	Extraction of Vital Signs from Clinical Notes. MedInfo Olga V. Patterson, Makoto Jones, Yiwen Yao, Benjamin Viernes, Patrick R. Alba, Theodore J. Iwashyna, Scott L. DuVall
2015	Misc	`conf`	Knowledge Base Acquisition For Rare Concepts Using Manual Bootstrapping. AMIA Patrick R. Alba, Scott L. DuVall, Joanne LaFleur, Adam Bress, Olga V. Patterson