Patrick D. Schloss

11 papers Journal 11

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Best practices to evaluate the impact of biomedical research software - metric collection beyond citations. Bioinform. Awan Afiaz, Andrey Ivanov, John Chamberlin, David Hanauer, Candace Savonen, Mary J. Goldman, Martin Morgan, Michael Reich, Alexander Getka, Aaron Holmes, Sarthak Pati, Dan Knight, Paul C. Boutros, Spyridon Bakas, J. Gregory Caporaso, Guilherme Del Fiol, Harry Hochheiser, Brian Haas, Patrick D. Schloss, James A. Eddy, Jake Albrecht, Andrey Fedorov, Levi Waldron, Ava M. Hoffman, Richard L. Bradshaw, Jeffrey T. Leek, Carrie Wright
2023	J	`jnl`	Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful? CoRR Awan Afiaz, Andrey Ivanov, John Chamberlin, David Hanauer, Candace Savonen, Mary J. Goldman, Martin Morgan, Michael Reich, Alexander Getka, Aaron Holmes, Sarthak Pati, Dan Knight, Paul C. Boutros, Spyridon Bakas, J. Gregory Caporaso, Guilherme Del Fiol, Harry Hochheiser, Brian Haas, Patrick D. Schloss, James A. Eddy, Jake Albrecht, Andrey Fedorov, Levi Waldron, Ava M. Hoffman, Richard L. Bradshaw, Jeffrey T. Leek, Carrie Wright
2021	J	`jnl`	mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines. J. Open Source Softw. Begüm D. Topçuoglu, Zena Lapp, Kelly L. Sovacool, Evan S. Snitkin, Jenna Wiens, Patrick D. Schloss
2020	J	`jnl`	Ten simple rules to increase computational skills among biologists with Code Clubs. PLoS Comput. Biol. Ada K. Hagan, Nicholas A. Lesniak, Marcy J. Balunas, Lucas Bishop, William L. Close, Matthew D. Doherty, Amanda G. Elmore, Kaitlin J. Flynn, Geoffrey D. Hannigan, Charlie C. Koumpouras, Matthew L. Jenior, Ariangela J. Kozik, Kathryn McBride, Samara B. Rifkin, Joshua M. A. Stough, Kelly L. Sovacool, Marc A. Sze, Sarah Tomkovich, Begüm D. Topçuoglu, Patrick D. Schloss
2018	J	`jnl`	Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome. PLoS Comput. Biol. Geoffrey D. Hannigan, Melissa Beth Duhaime, Danai Koutra, Patrick D. Schloss
2012	J	`jnl`	Bioinformatics for the Human Microbiome Project. PLoS Comput. Biol. Dirk Gevers, Mihai Pop, Patrick D. Schloss, Curtis Huttenhower
2012	J	`jnl`	Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. PLoS Comput. Biol. Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M. Schubert, Jacques Izard, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T. Kelley, Barbara A. Methé, Patrick D. Schloss, Dirk Gevers, Makedonka Dautova Mitreva, Curtis Huttenhower
2010	J	`jnl`	Automated GMP production of [11C]PR04.MZ via the captive solvent method and PET studies in non-human primates: A promising tracer for extrastriatal DAT imaging. NeuroImage Patrick J. Riss, Jacob M. Hooker, David L. Alexoff, Sung-Won Kim, Rene Hummerich, Valentina Ferrari, Patrick D. Schloss, Joanna S. Fowler, Frank Roesch, Franklin I. Aigbirhio
2010	J	`jnl`	The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies. PLoS Comput. Biol. Patrick D. Schloss
2008	J	`jnl`	A statistical toolbox for metagenomics: assessing functional diversity in microbial communities. BMC Bioinform. Patrick D. Schloss, Jo Handelsman
2006	J	`jnl`	Toward a Census of Bacteria in Soil. PLoS Comput. Biol. Patrick D. Schloss, Jo Handelsman