Patrick Aloy

24 papers A 1Journal 23
YearRankTypeTitle / Venue / Authors
2025 J jnl
APBIO: bioactive profiling of air pollutants through inferred bioactivity signatures and prediction of novel target interactions.
J. Cheminformatics
Eva Viesi, Ugo Perricone, Patrick Aloy, Rosalba Giugno
2025 J jnl
Correction: APBIO: bioactive profiling of air pollutants through inferred bioactivity signatures and prediction of novel target interactions.
J. Cheminformatics
Eva Viesi, Ugo Perricone, Patrick Aloy, Rosalba Giugno
2024 J jnl
Stereochemically-aware bioactivity descriptors for uncharacterized chemical compounds.
J. Cheminformatics
Arnau Comajuncosa-Creus, Aksel Lenes, Miguel Sánchez-Palomino, Dylan Dalton, Patrick Aloy
2023 J jnl
BQsupports: systematic assessment of the support and novelty of new biomedical associations.
Bioinform.
Adrià Fernández-Torras, Martina Locatelli, Martino Bertoni, Patrick Aloy
2020 J jnl
A reference map of the human binary protein interactome.
Nat.
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
2020 J jnl
Bioactivity Profile Similarities to Expand the Repertoire of COVID-19 Drugs.
J. Chem. Inf. Model.
Miquel Duran-Frigola, Martino Bertoni, Roi Blanco, Víctor Martínez, Eduardo Pauls, Víctor Alcalde, Gemma Turon, Núria Villegas, Adrià Fernández-Torras, Carles Pons, Lidia Mateo, Oriol Guitart-Pla, Pau Badia-i-Mompel, Aleix Gimeno, Nicolas Soler, Isabelle Brun-Heath, Hugo Zaragoza, Patrick Aloy
2017 J jnl
A PanorOmic view of personal cancer genomes.
Nucleic Acids Res.
Lidia Mateo, Oriol Guitart-Pla, Carles Pons, Miquel Duran-Frigola, Roberto Mosca, Patrick Aloy
2017 J jnl
Detecting similar binding pockets to enable systems polypharmacology.
PLoS Comput. Biol.
Miquel Duran-Frigola, Lydia Siragusa, Eytan Ruppin, Xavier Barril, Gabriele Cruciani, Patrick Aloy
2015 J jnl
IntSide: a web server for the chemical and biological examination of drug side effects.
Bioinform.
Teresa Juan-Blanco, Miquel Duran-Frigola, Patrick Aloy
2015 J jnl
Using neighborhood cohesiveness to infer interactions between protein domains.
Bioinform.
Joan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo
2014 J jnl
3did: a catalog of domain-based interactions of known three-dimensional structure.
Nucleic Acids Res.
Roberto Mosca, Arnaud Céol, Amelie Stein, Roger Olivella, Patrick Aloy
2012 J jnl
NetAligner - a network alignment server to compare complexes, pathways and whole interactomes.
Nucleic Acids Res.
Roland A. Pache, Arnaud Céol, Patrick Aloy
2011 J jnl
3did: identification and classification of domain-based interactions of known three-dimensional structure.
Nucleic Acids Res.
Amelie Stein, Arnaud Céol, Patrick Aloy
2010 J jnl
Novel Peptide-Mediated Interactions Derived from High-Resolution 3-Dimensional Structures.
PLoS Comput. Biol.
Amelie Stein, Patrick Aloy
2009 J jnl
3did Update: domain-domain and peptide-mediated interactions of known 3D structure.
Nucleic Acids Res.
Amelie Stein, Alejandro Panjkovich, Patrick Aloy
2009 J jnl
Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions.
BMC Syst. Biol.
Roland A. Pache, M. Madan Babu, Patrick Aloy
2009 J jnl
Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments.
PLoS Comput. Biol.
Roberto Mosca, Carles Pons, Juan Fernández-Recio, Patrick Aloy
2008 J jnl
Approved Drug Mimics of Short Peptide Ligands from Protein Interaction Motifs.
J. Chem. Inf. Model.
Laavanya Parthasarathi, Fergal P. Casey, Amelie Stein, Patrick Aloy, Denis C. Shields
2005 J jnl
3did: interacting protein domains of known three-dimensional structure.
Nucleic Acids Res.
Amelie Stein, Robert B. Russell, Patrick Aloy
2003 J jnl
InterPreTS: protein Interaction Prediction through Tertiary Structure.
Bioinform.
Patrick Aloy, Robert B. Russell
2001 J jnl
Classification of protein disulphide-bridge topologies.
J. Comput. Aided Mol. Des.
José M. Mas, Patrick Aloy, Marc A. Martí-Renom, Baldomero Oliva, R. de Llorens, Francesc X. Avilés, Enrique Querol
2000 J jnl
Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2.
J. Comput. Aided Mol. Des.
Patrick Aloy, José M. Mas, Marc A. Martí-Renom, Enrique Querol, Francesc X. Avilés, Baldomero Oliva
1998 A conf
A Computational System for Modeling Flexible Protein-Protein and protein-DNA Docking.
ISMB
Michael J. E. Sternberg, Patrick Aloy, Henry A. Gabb, Richard M. Jackson, Gidon Moont, Enrique Querol, Francesc X. Avilés
1997 J jnl
'TransMem': a neural network implemented in Excel spreadsheets for predicting transmembrane domains of proteins.
Comput. Appl. Biosci.
Patrick Aloy, Juan Cedano, Baldomero Oliva, Francesc X. Avilés, Enrique Querol