Patrice Koehl

35 papers C 1Journal 31Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Persistence diagrams as morphological signatures of cells: A method to measure and compare cells within a population.
PLoS Comput. Biol.
Yossi Bokor Bleile, Pooja Yadav, Patrice Koehl, Florian Rehfeldt
2024 J jnl
A General Statistical Physics Framework for Assignment Problems.
Algorithms
Patrice Koehl, Henri Orland
2023 J jnl
A Physicist's View on Partial 3D Shape Matching.
Algorithms
Patrice Koehl, Henri Orland
2023 J jnl
Computing the Gromov-Wasserstein Distance between Two Surface Meshes Using Optimal Transport.
Algorithms
Patrice Koehl, Marc Delarue, Henri Orland
2023 J jnl
Computing the Volume, Surface Area, Mean, and Gaussian Curvatures of Molecules and Their Derivatives.
J. Chem. Inf. Model.
Patrice Koehl, Arseniy V. Akopyan, Herbert Edelsbrunner
2022 J jnl
Stable Evaluation of 3D Zernike Moments for Surface Meshes.
Algorithms
Jérôme Houdayer, Patrice Koehl
2021 J jnl
Parameterizing elastic network models to capture the dynamics of proteins.
J. Comput. Chem.
Patrice Koehl, Henri Orland, Marc Delarue
2018 J jnl
Eleven quick tips for running an interdisciplinary short course for new graduate students.
PLoS Comput. Biol.
Timothy E. Saunders, Cynthia Y. He, Patrice Koehl, Lee-Ling Sharon Ong, Peter T. C. So
2017 J jnl
A weighted string kernel for protein fold recognition.
BMC Bioinform.
Saghi Nojoomi, Patrice Koehl
2017 J jnl
Comparing shapes of genus-zero surfaces.
J. Appl. Comput. Topol.
Joel Hass, Patrice Koehl
2017 J jnl
String kernels for protein sequence comparisons: improved fold recognition.
BMC Bioinform.
Saghi Nojoomi, Patrice Koehl
2014 J jnl
Automatic Alignment of Genus-Zero Surfaces.
IEEE Trans. Pattern Anal. Mach. Intell.
Patrice Koehl, Joel Hass
2014 J jnl
Identifying essential pairwise interactions in elastic network model using the alpha shape theory.
J. Comput. Chem.
Fei Xia, Dudu Tong, Lifeng Yang, Dayong Wang, Steven C. H. Hoi, Patrice Koehl, Lanyuan Lu
2013 J jnl
An analytical method for computing atomic contact areas in biomolecules.
J. Comput. Chem.
Paul Mach, Patrice Koehl
2013 — conf
Globally Optimal Cortical Surface Matching with Exact Landmark Correspondence.
IPMI
Alex Tsui, Devin Fenton, Phong Vuong, Joel Hass, Patrice Koehl, Nina Amenta, David Coeurjolly, Charles DeCarli, Owen T. Carmichael
2012 J jnl
Fast Recursive Computation of 3D Geometric Moments from Surface Meshes.
IEEE Trans. Pattern Anal. Mach. Intell.
Patrice Koehl
2012 J jnl
The H-factor as a novel quality metric for homology modeling.
J. Clin. Bioinform.
Eric di Luccio, Patrice Koehl
2011 J jnl
A quality metric for homology modeling: the H-factor.
BMC Bioinform.
Eric di Luccio, Patrice Koehl
2011 J jnl
Adaptive skin meshes coarsening for biomolecular simulation.
Comput. Aided Geom. Des.
Xinwei Shi, Patrice Koehl
2011 J jnl
AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models.
Nucleic Acids Res.
Frédéric Poitevin, Henri Orland, Sebastian Doniach, Patrice Koehl, Marc Delarue
2011 J jnl
Geometric measures of large biomolecules: Surface, volume, and pockets.
J. Comput. Chem.
Paul Mach, Patrice Koehl
2010 J jnl
Sampling the conformation of protein surface residues for flexible protein docking.
BMC Bioinform.
Patricia Francis-Lyon, Shengyin Gu, Joel Hass, Nina Amenta, Patrice Koehl
2009 C conf
Adaptive surface meshes coarsening with guaranteed quality and topology.
CGI
Xinwei Shi, Patrice Koehl
2008 — ch.
Visual Analysis of Biomolecular Surfaces.
Visualization in Medicine and Life Sciences
Vijay Natarajan, Patrice Koehl, Yusu Wang, Bernd Hamann
2007 — conf
A Geometric Representation of Protein Sequences.
BIBM
Shengyin Gu, Olivier Poch, Bernd Hamann, Patrice Koehl
2007 J jnl
MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape.
Nucleic Acids Res.
Joel Franklin, Patrice Koehl, Sebastian Doniach, Marc Delarue
2006 J jnl
Geometric filtering of pairwise atomic interactions applied to the design of efficient statistical potentials.
Comput. Aided Geom. Des.
Afra Zomorodian, Leonidas J. Guibas, Patrice Koehl
2006 J jnl
NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis.
Nucleic Acids Res.
Erik Lindahl, Cyril Azuara, Patrice Koehl, Marc Delarue
2006 J jnl
PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics.
Nucleic Acids Res.
Cyril Azuara, Erik Lindahl, Patrice Koehl, Henri Orland, Marc Delarue
2005 J jnl
Inverse Kinematics in Biology: The Protein Loop Closure Problem.
Int. J. Robotics Res.
Rachel Kolodny, Leonidas J. Guibas, Michael Levitt, Patrice Koehl
2004 J jnl
The ASTRAL Compendium in 2004.
Nucleic Acids Res.
John-Marc Chandonia, Gary Chung Hon, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, Steven E. Brenner
2004 J jnl
The Area Derivative of a Space-Filling Diagram.
Discret. Comput. Geom.
Robert L. Bryant, Herbert Edelsbrunner, Patrice Koehl, Michael Levitt
2002 J jnl
ASTRAL compendium enhancements.
Nucleic Acids Res.
John-Marc Chandonia, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, Steven E. Brenner
2002 J jnl
Algorithmic issues in modeling motion.
ACM Comput. Surv.
Pankaj K. Agarwal, Leonidas J. Guibas, Herbert Edelsbrunner, Jeff Erickson, Michael Isard, Sariel Har-Peled, John Hershberger, Christian S. Jensen, Lydia E. Kavraki, Patrice Koehl, Ming C. Lin, Dinesh Manocha, Dimitris N. Metaxas, Brian Mirtich, David M. Mount, S. Muthukrishnan, Dinesh K. Pai, Elisha Sacks, Jack Snoeyink, Subhash Suri, Ouri Wolfson
2000 J jnl
The ASTRAL compendium for protein structure and sequence analysis.
Nucleic Acids Res.
Steven E. Brenner, Patrice Koehl, Michael Levitt