Paolo Marcatili

20 papers Journal 18Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning.
Nucleic Acids Res.
Magnus Haraldson Høie, Erik Nicolas Kiehl, Bent Petersen, Morten Nielsen, Ole Winther, Henrik Nielsen, Jeppe Hallgren, Paolo Marcatili
2020 J jnl
The ABCD database: a repository for chemically defined antibodies.
Nucleic Acids Res.
Wanessa C. Lima, Elisabeth Gasteiger, Paolo Marcatili, Paula Duek Roggli, Amos Bairoch, Pierre Cosson
2020 J jnl
proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking.
Bioinform.
Francesco Ambrosetti, Tobias Hegelund Olsen, Pier Paolo Olimpieri, Brian Jiménez-García, Edoardo Milanetti, Paolo Marcatili, Alexandre M. J. J. Bonvin
2019 J jnl
Benchmark datasets of immune receptor-epitope structural complexes.
BMC Bioinform.
Swapnil Mahajan, Zhen Yan, Martin Closter Jespersen, Kamilla Kjærgaard Jensen, Paolo Marcatili, Morten Nielsen, Alessandro Sette, Bjoern Peters
2019 J jnl
IEDB-AR: immune epitope database - analysis resource in 2019.
Nucleic Acids Res.
Sandeep Kumar Dhanda, Swapnil Mahajan, Sinu Paul, Zhen Yan, Haeuk Kim, Martin Closter Jespersen, Vanessa Isabell Jurtz, Massimo Andreatta, Jason A. Greenbaum, Paolo Marcatili, Alessandro Sette, Morten Nielsen, Bjoern Peters
2018 J jnl
Automated shape-based clustering of 3D immunoglobulin protein structures in chronic lymphocytic leukemia.
BMC Bioinform.
Eleftheria Polychronidou, Ilias Kalamaras, Andreas Agathangelidis, Lesley Ann Sutton, Xiao-Jie Yan, Vasilis Bikos, Anna Vardi, Konstantinos Mochament, Nicholas Chiorazzi, Chrysoula Belessi, Richard Rosenquist, Paolo Ghia, Kostas Stamatopoulos, Panayiotis M. Vlamos, Anna Chailyan, Nanna Overby, Paolo Marcatili, Anastasia Hatzidimitriou, Dimitrios Tzovaras
2017 — conf
3D Protein-Structure-Oriented Discovery of Clinical Relation Across Chronic Lymphocytic Leukemia Patients.
IWBBIO (2)
Konstantinos Mochament, Andreas Agathangelidis, Eleftheria Polychronidou, Christos Palaskas, Elias Kalamaras, Panagiotis Moschonas, Kostas Stamatopoulos, Anna Chailyan, Nanna Overby, Paolo Marcatili, Anastasia Hadzidimitriou, Dimitrios Tzovaras
2017 J jnl
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes.
Nucleic Acids Res.
Martin Closter Jespersen, Bjoern Peters, Morten Nielsen, Paolo Marcatili
2016 J jnl
Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity.
PLoS Comput. Biol.
Lorenzo Asti, Guido Uguzzoni, Paolo Marcatili, Andrea Pagnani
2015 J jnl
LYRA, a webserver for lymphocyte receptor structural modeling.
Nucleic Acids Res.
Michael Schantz Klausen, Mads Valdemar Anderson, Martin Closter Jespersen, Morten Nielsen, Paolo Marcatili
2015 J jnl
Tabhu: tools for antibody humanization.
Bioinform.
Pier Paolo Olimpieri, Paolo Marcatili, Anna Tramontano
2014 J jnl
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies.
Bioinform.
Mario Abdel Messih, Rosalba Lepore, Paolo Marcatili, Anna Tramontano
2013 J jnl
Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server.
Bioinform.
Pier Paolo Olimpieri, Anna Chailyan, Anna Tramontano, Paolo Marcatili
2012 J jnl
A database of immunoglobulins with integrated tools: DIGIT.
Nucleic Acids Res.
Anna Chailyan, Anna Tramontano, Paolo Marcatili
2011 J jnl
MAISTAS: a tool for automatic structural evaluation of alternative splicing products.
Bioinform.
Matteo Floris, Domenico Raimondo, Guido Leoni, Massimiliano Orsini, Paolo Marcatili, Anna Tramontano
2010 J jnl
PICMI: mapping point mutations on genomes.
Bioinform.
Loredana Le Pera, Paolo Marcatili, Anna Tramontano
2010 — conf
Structural landscape of immunoglobulin lambda light chains.
BCB
Anna Chailyan, Davide Cirillo, Paolo Marcatili, Anna Tramontano
2008 J jnl
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.
BMC Bioinform.
Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich
2008 J jnl
PIGS: automatic prediction of antibody structures.
Bioinform.
Paolo Marcatili, Alessandra Rosi, Anna Tramontano
2008 J jnl
The MoVIN server for the analysis of protein interaction networks.
BMC Bioinform.
Paolo Marcatili, Giovanni Bussotti, Anna Tramontano