Paola Paci

28 papers Journal 18Unranked 9
YearRankTypeTitle / Venue / Authors
2024 — conf
A network-based bioinformatic analysis for identifying potential repurposable drugs for obesity avoiding hepatic steatosis side-effect.
BIBM
Martina Brunetti, Giulia Fiscon, Alessia Di Costanzo, Marcello Arca, Paola Paci
2024 — conf
Beyond the network-based multi-omics data integration in COPD: a pathway-centric analysis.
BIBM
Pasquale Sibilio, Federica Conte, Paola Paci
2024 — conf
Differential gene correlation analysis to investigate evolutionary divergence between Cardamine hirsuta and Arabidopsis thaliana.
BIBM
Federica D'Annunzio, Giulia Fiscon, Gaia Bertolotti, Raffaele Dello Ioio, Paola Paci
2024 — conf
Unveiling drug-induced side effects through network-based analysis: an update.
BIBM
Alessio Funari, Federica Conte, Paola Paci
2023 — conf
A network-based bioinformatic analysis for identifying potential repurposable active molecules in different types of human cancers.
BIBM
Martina Brunetti, Paola Paci, Giulia Fiscon
2023 — conf
A single-cell transcriptomic analysis of Neuroblastomas revealed a selective cGAS-STING pathway suppression in malignant cells.
BIBM
Pasquale Sibilio, Stefano Di Giulio, Alessio Funari, Paola Paci, Veronica Veschi, Giuseppe Giannini
2023 — conf
Network-based analysis to uncover drug-induced adverse side-effects.
BIBM
Alessio Funari, Paola Paci, Federica Conte
2023 — conf
Overview of bioinformatic tools to study viral infections.
BIBM
Verdiana Zulian, Anna Rosa Garbuglia, Giulia Fiscon, Paola Paci
2022 J jnl
A Transcriptome- and Interactome-Based Analysis Identifies Repurposable Drugs for Human Breast Cancer Subtypes.
Symmetry
Federica Conte, Pasquale Sibilio, Giulia Fiscon, Paola Paci
2022 J jnl
Mining sponge phenomena in RNA expression data.
J. Bioinform. Comput. Biol.
Fabrizio Angiulli, Teresa Colombo, Fabio Fassetti, Angelo Furfaro, Paola Paci
2022 J jnl
SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks.
BMC Bioinform.
Paola Paci, Giulia Fiscon
2022 J jnl
SWIMmeR: an R-based software to unveiling crucial nodes in complex biological networks.
Bioinform.
Paola Paci, Giulia Fiscon
2022 J jnl
StaRTrEK: in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition.
BMC Bioinform.
Federica Conte, Federico Papa, Paola Paci, Lorenzo Farina
2021 J jnl
Assessing the impact of data-driven limitations on tracing and forecasting the outbreak dynamics of COVID-19.
Comput. Biol. Medicine
Giulia Fiscon, Francesco Salvadore, Valerio Guarrasi, Anna Rosa Garbuglia, Paola Paci
2021 J jnl
Integro-differential approach for modeling the COVID-19 dynamics - Impact of confinement measures in Italy.
Comput. Biol. Medicine
Francesco Salvadore, Giulia Fiscon, Paola Paci
2021 J jnl
SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19.
PLoS Comput. Biol.
Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci
2021 J jnl
SAveRUNNER: an R-based tool for drug repurposing.
BMC Bioinform.
Giulia Fiscon, Paola Paci
2021 J jnl
SEaCorAl: Identifying and contrasting the regulation-correlation bias in RNA-Seq paired expression data of patient groups.
Comput. Biol. Medicine
Manuela Petti, Antonella Verrienti, Paola Paci, Lorenzo Farina
2019 J jnl
MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis.
BMC Bioinform.
Valerio Licursi, Federica Conte, Giulia Fiscon, Paola Paci
2019 — ch.
Network Inference and Reconstruction in Bioinformatics.
Encyclopedia of Bioinformatics and Computational Biology (2)
Paolo Tieri, Lorenzo Farina, Manuela Petti, Laura Astolfi, Paola Paci, Filippo Castiglione
2014 J jnl
Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer.
BMC Syst. Biol.
Paola Paci, Teresa Colombo, Lorenzo Farina
2014 J jnl
Correction to Modules Identification in Protein Structures: The Topological and Geometrical Solutions.
J. Chem. Inf. Model.
Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani
2014 J jnl
Modules Identification in Protein Structures: The Topological and Geometrical Solutions.
J. Chem. Inf. Model.
Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani
2012 J jnl
Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles.
J. Chem. Inf. Model.
Luisa Di Paola, Paola Paci, Daniele Santoni, Micol De Ruvo, Alessandro Giuliani
2012 J jnl
Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay.
PLoS Comput. Biol.
Filippo Cacace, Paola Paci, Valerio Cusimano, Alfredo Germani, Lorenzo Farina
2009 J jnl
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.
Briefings Bioinform.
Francesco Pappalardo, Mark D. Halling-Brown, Nicolas Rapin, Ping Zhang, Davide Alemani, Andrew P. J. Emerson, Paola Paci, Patrice Duroux, Marzio Pennisi, Arianna Palladini, Olivo Miotto, Daniel Churchill, Elda Rossi, Adrian J. Shepherd, David S. Moss, Filippo Castiglione, Massimo Bernaschi, Marie-Paule Lefranc, Søren Brunak, Santo Motta, Pierluigi Lollini, Kaye E. Basford, Vladimir Brusic
2009 J jnl
Modeling lymphocyte homing and encounters in lymph nodes.
BMC Bioinform.
Valentina Baldazzi, Paola Paci, Massimo Bernaschi, Filippo Castiglione
2008 — conf
A Discrete/Continuous Model of Anti-HIV Response and Therapy.
UKSim
Paola Paci, Filippo Castiglione, Massimo Bernaschi, Valentina Baldazzi