Pantelis G. Bagos

42 papers Journal 38Unranked 3

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	PYRAMA: an open-source tool for advanced meta-analysis of genome wide association studies. Bioinform. Georgios A. Manios, Sophia Nteli, Panagiota I. Kontou, Pantelis G. Bagos
2025	—	`conf`	A Partial Correlation Network from Summary Data Can Identify Causally Related Diseases. IWBBIO (1) Panagiota I. Kontou, Ioanna V. Sasilioglou, Pantelis G. Bagos
2025	J	`jnl`	PRED-LD: efficient imputation of GWAS summary statistics. BMC Bioinform. Georgios A. Manios, Aikaterini Michailidi, Panagiota I. Kontou, Pantelis G. Bagos
2025	J	`jnl`	metacp: a versatile software package for combining dependent or independent p-values. BMC Bioinform. Evgenia K. Nikolitsa, Panagiota I. Kontou, Pantelis G. Bagos
2024	J	`jnl`	CW-PRED: Prediction of C-terminal surface anchoring sorting signals in bacteria and Archaea. J. Bioinform. Comput. Biol. Aikaterini G. Chatziargyri, Evangelia A. Stasi, Konstantinos D. Tsirigos, Zoi I. Litou, Vassiliki A. Iconomidou, Pantelis G. Bagos
2024	J	`jnl`	The goldmine of GWAS summary statistics: a systematic review of methods and tools. BioData Min. Panagiota I. Kontou, Pantelis G. Bagos
2023	J	`jnl`	Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources. Bioinform. Evangelos Karatzas, Fotis A. Baltoumas, Eleni Aplakidou, Panagiota I. Kontou, Panos Stathopoulos, Leonidas Stefanis, Pantelis G. Bagos, Georgios A. Pavlopoulos
2021	J	`jnl`	OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins. Frontiers Bioinform. Ahmed F. Roumia, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Ioannis A. Tamposis, Stavros J. Hamodrakas, Pantelis G. Bagos
2021	J	`jnl`	The human GPCR signal transduction network. Netw. Model. Anal. Health Informatics Bioinform. Panagiota I. Kontou, Athanasia Pavlopoulou, Niki L. Dimou, Margarita C. Theodoropoulou, Georgia Braliou, Georgios N. Tsaousis, Georgios A. Pavlopoulos, Stavros J. Hamodrakas, Pantelis G. Bagos
2021	J	`jnl`	VICTOR: A visual analytics web application for comparing cluster sets. Comput. Biol. Medicine Evangelos Karatzas, Maria Gkonta, Joana Hotova, Fotis A. Baltoumas, Panagiota I. Kontou, Christopher J. Bobotsis, Pantelis G. Bagos, Georgios A. Pavlopoulos
2019	J	`jnl`	JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis. Bioinform. Ioannis A. Tamposis, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Panagiota I. Kontou, Georgios N. Tsaousis, Dimitra Sarantopoulou, Zoi I. Litou, Pantelis G. Bagos
2019	J	`jnl`	Semi-supervised learning of Hidden Markov Models for biological sequence analysis. Bioinform. Ioannis A. Tamposis, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Panagiota I. Kontou, Pantelis G. Bagos
2019	J	`jnl`	Ten simple rules for carrying out and writing meta-analyses. PLoS Comput. Biol. Diego A. Forero, Sandra Lopez-Leon, Yeimy González-Giraldo, Pantelis G. Bagos
2018	J	`jnl`	ECCB 2018: The 17th European Conference on Computational Biology. Bioinform. Artemis G. Hatzigeorgiou, Pantelis G. Bagos, Panayiotis V. Benos, Christoforos Nikolaou, Yves Moreau, Ioannis Kavakiotis
2018	J	`jnl`	Extending hidden Markov models to allow conditioning on previous observations. J. Bioinform. Comput. Biol. Ioannis A. Tamposis, Margarita C. Theodoropoulou, Konstantinos D. Tsirigos, Pantelis G. Bagos
2017	J	`jnl`	Discriminating membrane proteins using the joint distribution of length sums of success and failure runs. Stat. Methods Appl. Sotirios Bersimis, Athanasios Sachlas, Pantelis G. Bagos
2017	J	`jnl`	GWAR: robust analysis and meta-analysis of genome-wide association studies. Bioinform. Niki L. Dimou, Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos
2016	J	`jnl`	PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins. Bioinform. Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos
2015	J	`jnl`	Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend
2012	—	`conf`	CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria. SETN Danai K. Fimereli, Konstantinos D. Tsirigos, Zoi I. Litou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
2011	J	`jnl`	OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria. Nucleic Acids Res. Konstantinos D. Tsirigos, Pantelis G. Bagos, Stavros J. Hamodrakas
2011	J	`jnl`	Using graph theory to analyze biological networks. BioData Min. Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos
2010	J	`jnl`	Combined prediction of Tat and Sec signal peptides with hidden Markov models. Bioinform. Pantelis G. Bagos, Elisanthi P. Nikolaou, Theodore D. Liakopoulos, Konstantinos D. Tsirigos
2010	J	`jnl`	ExTopoDB: a database of experimentally derived topological models of transmembrane proteins. Bioinform. Georgios N. Tsaousis, Konstantinos D. Tsirigos, Xanthi D. Andrianou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
2010	J	`jnl`	GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database J. Biol. Databases Curation Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas
2009	J	`jnl`	How Many 3D Structures Do We Need to Train a Predictor? Genom. Proteom. Bioinform. Pantelis G. Bagos, Georgios N. Tsaousis, Stavros J. Hamodrakas
2008	J	`jnl`	Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes. J. Bioinform. Comput. Biol. Zoi I. Litou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, Stavros J. Hamodrakas
2008	J	`jnl`	gpDB: a database of GPCRs, G-proteins, effectors and their interactions. Bioinform. Margarita C. Theodoropoulou, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
2006	J	`jnl`	Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins. BMC Bioinform. Pantelis G. Bagos, Theodore D. Liakopoulos, Stavros J. Hamodrakas
2006	J	`jnl`	PredSL: A Tool for the N-terminal Sequence-based Prediction of Protein Subcellular Localization. Genom. Proteom. Bioinform. Evangelia Petsalaki, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas
2006	J	`jnl`	beta-Barrel transmembrane proteins: Geometric modelling, detection of transmembrane region, and structural properties. Comput. Biol. Chem. Ioannis K. Valavanis, Pantelis G. Bagos, Ioannis Z. Emiris
2005	J	`jnl`	A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models. BMC Bioinform. Nikolaos G. Sgourakis, Pantelis G. Bagos, Panagiotis K. Papasaikas, Stavros J. Hamodrakas
2005	J	`jnl`	Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. BMC Bioinform. Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas
2005	J	`jnl`	N-terminal sequence-based prediction of subcellular location. BMC Bioinform. Evangelia Petsalakis, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas
2005	J	`jnl`	Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks. Bioinform. Nikolaos G. Sgourakis, Pantelis G. Bagos, Stavros J. Hamodrakas
2005	—	`—`	Πρόγνωση δομής και λειτουργίας μεμβρανικών πρωτεϊνών Pantelis G. Bagos
2004	J	`jnl`	A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins. BMC Bioinform. Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
2004	J	`jnl`	A database for G proteins and their interaction with GPCRs. BMC Bioinform. Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
2004	—	`conf`	Faster Gradient Descent Training of Hidden Markov Models, Using Individual Learning Rate Adaptation. ICGI Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas
2004	J	`jnl`	PRED-GPCR: GPCR recognition and family classification server. Nucleic Acids Res. Panagiotis K. Papasaikas, Pantelis G. Bagos, Zoi I. Litou, Vasilis J. Promponas, Stavros J. Hamodrakas
2004	J	`jnl`	PRED-TMBB: a web server for predicting the topology of ?barrel outer membrane proteins. Nucleic Acids Res. Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
2004	J	`jnl`	TMRPres2D: high quality visual representation of transmembrane protein models. Bioinform. Ioannis C. Spyropoulos, Theodore Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas