Pablo Meyer

27 papers Journal 26Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects.
CoRR
Hongyang Li, Sanjoy Dey, Bum Chul Kwon, Michael M. Danziger, Michal Rosen-Tzvi, Jianying Hu, James Kozloski, Ching-Huei Tsou, Bharath Dandala, Pablo Meyer
2025 J jnl
Genetics-Driven Personalized Disease Progression Model.
CoRR
Haoyu Yang, Sanjoy Dey, Pablo Meyer
2025 — conf
MetaExplainer In Action: An Overview of a Framework to Generate Multi-Type User-Centered Explanations.
ISWC (Industry/Doctoral Consortium/Posters/Demos)
Shruthi Chari, Oshani Seneviratne, Prithwish Chakraborty, Pablo Meyer, Deborah L. McGuinness
2025 J jnl
MetaExplainer: A Framework to Generate Multi-Type User-Centered Explanations for AI Systems.
CoRR
Shruthi Chari, Oshani Seneviratne, Prithwish Chakraborty, Pablo Meyer, Deborah L. McGuinness
2024 J jnl
Explanation Ontology: A general-purpose, semantic representation for supporting user-centered explanations.
Semantic Web
Shruthi Chari, Oshani Seneviratne, Mohamed F. Ghalwash, Sola Shirai, Daniel M. Gruen, Pablo Meyer, Prithwish Chakraborty, Deborah L. McGuinness
2024 J jnl
Multi-view biomedical foundation models for molecule-target and property prediction.
CoRR
Parthasarathy Suryanarayanan, Yunguang Qiu, Shreyans Sethi, Diwakar Mahajan, Hongyang Li, Yuxin Yang, Elif K. Eyigöz, Aldo Guzmán-Sáenz, Daniel E. Platt, Timothy H. Rumbell, Kenney Ng, Sanjoy Dey, Myson Burch, Bum Chul Kwon, Pablo Meyer, Feixiong Cheng, Jianying Hu, Joseph A. Morrone
2023 J jnl
Improving Primary Healthcare Workflow Using Extreme Summarization of Scientific Literature Based on Generative AI.
CoRR
Gregor Stiglic, Leon Kopitar, Lucija Gosak, Primoz Kocbek, Zhe He, Prithwish Chakraborty, Pablo Meyer, Jiang Bian
2023 J jnl
Informing clinical assessment by contextualizing post-hoc explanations of risk prediction models in type-2 diabetes.
Artif. Intell. Medicine
Shruthi Chari, Prasant Acharya, Daniel M. Gruen, Olivia Zhang, Elif K. Eyigöz, Mohamed F. Ghalwash, Oshani Seneviratne, Fernando J. Suarez Saiz, Pablo Meyer, Prithwish Chakraborty, Deborah L. McGuinness
2023 J jnl
Informing clinical assessment by contextualizing post-hoc explanations of risk prediction models in type-2 diabetes.
CoRR
Shruthi Chari, Prasant Acharya, Daniel M. Gruen, Olivia Zhang, Elif K. Eyigöz, Mohamed F. Ghalwash, Oshani Seneviratne, Fernando J. Suarez Saiz, Pablo Meyer, Prithwish Chakraborty, Deborah L. McGuinness
2022 J jnl
Distillation to Enhance the Portability of Risk Models Across Institutions with Large Patient Claims Database.
CoRR
Steve Nyemba, Chao Yan, Ziqi Zhang, Amol Rajmane, Pablo Meyer, Prithwish Chakraborty, Bradley A. Malin
2022 J jnl
Human-centered explainability for life sciences, healthcare, and medical informatics.
Patterns
Sanjoy Dey, Prithwish Chakraborty, Bum Chul Kwon, Amit Dhurandhar, Mohamed F. Ghalwash, Fernando J. Suarez Saiz, Kenney Ng, Daby Sow, Kush R. Varshney, Pablo Meyer
2021 J jnl
Disease Progression Modeling Workbench 360.
CoRR
Parthasarathy Suryanarayanan, Prithwish Chakraborty, Piyush Madan, Kibichii Bore, William Ogallo, Rachita Chandra, Mohamed F. Ghalwash, Italo Buleje, Sekou L. Remy, Shilpa Mahatma, Pablo Meyer, Jianying Hu
2015 J jnl
A crowd-sourcing approach for the construction of species-specific cell signaling networks.
Bioinform.
Erhan Bilal, Theodore Sakellaropoulos, Challenge Participants, Ioannis N. Melas, Dimitris E. Messinis, Vincenzo Belcastro, Kahn Rhrissorrakrai, Pablo Meyer, Raquel Norel, Anita Iskandar, Elise Blaese, John Jeremy Rice, Manuel C. Peitsch, Julia Hoeng, Gustavo Stolovitzky, Leonidas G. Alexopoulos, Carine Poussin
2015 J jnl
Advances in systems biology - New trends and perspectives.
Comput. Biol. Chem.
Enrique Hernández-Lemus, Wentian Li, Pablo Meyer
2015 J jnl
DREAMTools: a Python package for scoring collaborative challenges.
F1000Research
Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez
2015 J jnl
Enzyme function is regulated by its localization.
Comput. Biol. Chem.
Stacey M. Gifford, Pablo Meyer
2015 J jnl
Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets.
Bioinform.
Sahand Hormoz, Gyan Bhanot, Michael Biehl, Erhan Bilal, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Adel Dayarian
2015 J jnl
Inter-species pathway perturbation prediction via data-driven detection of functional homology.
Bioinform.
Christoph Hafemeister, Roberto Romero, Erhan Bilal, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Richard Bonneau, Adi L. Tarca
2015 J jnl
Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge.
Bioinform.
Michael Biehl, Peter J. Sadowski, Gyan Bhanot, Erhan Bilal, Adel Dayarian, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Michael D. Zeller, Sahand Hormoz
2015 J jnl
Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge.
Bioinform.
Adel Dayarian, Roberto Romero, Zhiming Wang, Michael Biehl, Erhan Bilal, Sahand Hormoz, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Gyan Bhanot, Feng Luo, Adi L. Tarca
2015 J jnl
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.
PLoS Comput. Biol.
Jonathan R. Karr, Alex H. Williams, Jeremy D. Zucker, Andreas Raue, Bernhard Steiert, Jens Timmer, Clemens Kreutz, Simon Wilkinson, Brandon A. Allgood, Brian M. Bot, Bruce R. Hoff, Michael R. Kellen, Markus W. Covert, Gustavo A. Stolovitzky, Pablo Meyer
2015 J jnl
Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge.
Bioinform.
Kahn Rhrissorrakrai, Vincenzo Belcastro, Erhan Bilal, Raquel Norel, Carine Poussin, Carole Mathis, Rémi H. J. Dulize, Nikolai V. Ivanov, Leonidas G. Alexopoulos, John Jeremy Rice, Manuel C. Peitsch, Gustavo Stolovitzky, Pablo Meyer, Julia Hoeng
2015 J jnl
Where are we at regarding species translation? A review of the sbv IMPROVER challenge.
Bioinform.
Julia Hoeng, Manuel C. Peitsch, Pablo Meyer, Igor Jurisica
2014 J jnl
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach.
BMC Syst. Biol.
Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, Bernhard Steiert, Jens Timmer, Erhan Bilal, Herbert M. Sauro, Gustavo Stolovitzky, Julio Saez-Rodriguez
2014 J jnl
Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria.
BMC Syst. Biol.
Pablo Meyer, Guillermo A. Cecchi, Gustavo Stolovitzky
2013 J jnl
Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.
Bioinform.
Adi L. Tarca, Mario Lauria, Michael Unger, Erhan Bilal, Stéphanie Boué, Kushal Kumar Dey, Julia Hoeng, Heinz Koeppl, Florian Martin, Pablo Meyer, Preetam Nandy, Raquel Norel, Manuel C. Peitsch, John Jeremy Rice, Roberto Romero, Gustavo Stolovitzky, Marja Talikka, Yang Xiang, Christoph Zechner, Improver Dsc Collaborators
2012 J jnl
Industrial methodology for process verification in research (IMPROVER): toward systems biology verification.
Bioinform.
Pablo Meyer, Julia Hoeng, John Jeremy Rice, Raquel Norel, Jörg Sprengel, Katrin Stolle, Thomas Bonk, Stephanie Corthesy, Ajay K. Royyuru, Manuel C. Peitsch, Gustavo Stolovitzky