Ozlem Keskin

31 papers C 1Journal 25Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
Repurposing AI for protein interactions and dynamics: opportunities, limitations, and lessons.
Frontiers Bioinform.
E. Sila Ozdemir, Hyunbum Jang, Ruth Nussinov, Attila Gürsoy, Ozlem Keskin
2025 J jnl
DeepAllo: allosteric site prediction using protein language model (pLM) with multitask learning.
Bioinform.
Moaaz Khokhar, Ozlem Keskin, Attila Gürsoy
2025 J jnl
WireGuard-AES: Hardware based encryption to WireGuard for VPN gateways.
SoftwareX
Mehmet Fatih Yuce, Ozlem Keskin, E. Yerlikaya, M. Y. Akmaz, A. Kirca, Derya Yiltas-Kaplan, Mehmet Ali Ertürk, Gulsum Zeynep Gurkas Aydin, Özgür Can Turna, M. Talha Buyukakkaslar, Safak Durukan-Odabasi, M. Ali Aydin
2024 J jnl
DiPPI: A Curated Data Set for Drug-like Molecules in Protein-Protein Interfaces.
J. Chem. Inf. Model.
Fatma Cankara, Simge Senyuz, Ahenk Zeynep Sayin, Attila Gürsoy, Ozlem Keskin
2024 J jnl
ProInterVal: Validation of Protein-Protein Interfaces through Learned Interface Representations.
J. Chem. Inf. Model.
Damla Ovek, Ozlem Keskin, Attila Gürsoy
2024 J jnl
Structural coverage of the human interactome.
Briefings Bioinform.
Kayra Kosoglu, Zeynep Aydin, Nurcan Tuncbag, Attila Gürsoy, Ozlem Keskin
2023 — conf
The interaction between mutated DYRK1A and APP suggests a potential target for vascular cognitive impairment.
BIBM
Melisa Ece Zeylan, Attila Gürsoy, Simge Senyuz, Ozlem Keskin
2022 J jnl
HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry.
Bioinform.
Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
2022 J jnl
SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions.
Bioinform.
Damla Ovek, Ameer Taweel, Zeynep Abali, Ece Tezsezen, Yunus Emre Koroglu, Chung-Jung Tsai, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy
2020 — ch.
Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks.
Protein-Protein Interaction Networks
Farideh Halakou, Attila Gürsoy, Ozlem Keskin
2020 J jnl
Identification of potential inhibitors of human methionine aminopeptidase (type II) for cancer therapy: Structure-based virtual screening, ADMET prediction and molecular dynamics studies.
Comput. Biol. Chem.
Jackson Weako, Abdullahi Ibrahim Uba, Ozlem Keskin, Attila Gürsoy, Kemal Yelekçi
2019 J jnl
3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients.
PLoS Comput. Biol.
Cansu Dincer, Tugba Turkoglu Kaya, Ozlem Keskin, Attila Gürsoy, Nurcan Tuncbag
2018 J jnl
Analysis of single amino acid variations in singlet hot spots of protein-protein interfaces.
Bioinform.
E. Sila Ozdemir, Attila Gürsoy, Ozlem Keskin
2017 C conf
Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases.
CIBCB
Farideh Halakou, Attila Gürsoy, Emel Sen Kilic, Ozlem Keskin
2014 — conf
Modeling Structural Protein Interaction Networks for Betweenness Analysis.
ISCIS
Deniz Demircioglu, Ozlem Keskin, Attila Gürsoy
2014 J jnl
PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.
Nucleic Acids Res.
Alper Baspinar, Engin Cukuroglu, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy
2014 J jnl
The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer.
PLoS Comput. Biol.
Saliha Ece Acuner Ozbabacan, Attila Gürsoy, Ruth Nussinov, Ozlem Keskin
2012 J jnl
A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets.
J. Chem. Inf. Model.
Billur Engin, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
2012 J jnl
HotRegion: a database of predicted hot spot clusters.
Nucleic Acids Res.
Engin Cukuroglu, Attila Gürsoy, Ozlem Keskin
2010 J jnl
CCRXP: exploring clusters of conserved residues in protein structures.
Nucleic Acids Res.
Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov
2010 J jnl
HotPoint: hot spot prediction server for protein interfaces.
Nucleic Acids Res.
Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy
2010 J jnl
Interaction prediction and classification of PDZ domains.
BMC Bioinform.
Sibel Kalyoncu, Ozlem Keskin, Attila Gürsoy
2009 J jnl
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces.
Briefings Bioinform.
Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov
2009 J jnl
Human Cancer Protein-Protein Interaction Network: A Structural Perspective.
PLoS Comput. Biol.
Gozde Kar, Attila Gürsoy, Ozlem Keskin
2009 J jnl
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.
Bioinform.
Nurcan Tuncbag, Attila Gürsoy, Ozlem Keskin
2009 J jnl
Investigation of the Interaction between the Large and Small Subunits of Potato ADP-Glucose Pyrophosphorylase.
PLoS Comput. Biol.
Ibrahim Baris, Aytug Tuncel, Natali Ozber, Ozlem Keskin, I. Halil Kavakli
2008 J jnl
HotSprint: database of computational hot spots in protein interfaces.
Nucleic Acids Res.
Emre Guney, Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy
2008 — ch.
Principles of Protein Recognition and Properties of Protein-protein Interfaces.
Protein-protein Interactions and Networks
Ozlem Keskin, Attila Gürsoy, Ruth Nussinov
2006 — conf
Structure Prediction of Potato Large Subunit ADP - Glucose Pyrophosphorylase.
BIOCOMP
Aytug Tuncel, I. Halil Kavakli, Ozlem Keskin
2005 J jnl
PRISM: protein interactions by structural matching.
Nucleic Acids Res.
Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy
2005 J jnl
Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces.
Bioinform.
A. Selim Aytuna, Attila Gürsoy, Ozlem Keskin