Ozgur E. Akman

24 papers Journal 13Unranked 10
YearRankTypeTitle / Venue / Authors
2023 J jnl
BDEtools: A MATLAB Package for Boolean Delay Equation Modeling.
J. Comput. Biol.
Ozgur E. Akman, Kevin Doherty, Benjamin J. Wareham
2023 J jnl
Global nonlinear approach for mapping parameters of neural mass models.
PLoS Comput. Biol.
Dominic M. Dunstan, Mark P. Richardson, Eugenio Abela, Ozgur E. Akman, Marc Goodfellow
2021 — ch.
Reduced Models of Gene Regulatory Networks: Visualising Multi-modal Landscapes.
Metaheuristics for Finding Multiple Solutions
Khulood AlYahya, Kevin A. J. Doherty, Ozgur E. Akman, Jonathan E. Fieldsend
2021 — conf
Towards population-based fitness landscape analysis using local optima networks.
GECCO Companion
Melike D. Karatas, Ozgur E. Akman, Jonathan E. Fieldsend
2020 J jnl
A simplified modelling framework facilitates more complex representations of plant circadian clocks.
PLoS Comput. Biol.
Mathias Foo, Declan G. Bates, Ozgur E. Akman
2020 J jnl
SODECL: An Open-Source Library for Calculating Multiple Orbits of a System of Stochastic Differential Equations in Parallel.
ACM Trans. Math. Softw.
Eleftherios Avramidis, Marta Lalik, Ozgur E. Akman
2020 J jnl
Slow-fast control of eye movements: an instance of Zeeman's model for an action.
Biol. Cybern.
Richard A. Clement, Ozgur E. Akman
2019 — conf
Landscape analysis under measurement error.
GECCO (Companion)
Khulood AlYahya, Ozgur E. Akman, Jonathan E. Fieldsend
2019 J jnl
SODECL: An Open Source Library for Calculating Multiple Orbits of a System of Stochastic Differential Equations in Parallel.
CoRR
Eleftherios Avramidis, Marta Lalik, Ozgur E. Akman
2018 — conf
Robust multi-modal optimisation.
GECCO (Companion)
Khulood AlYahya, Kevin Anthony James Doherty, Ozgur E. Akman, Jonathan E. Fieldsend
2018 — conf
Voronoi-based archive sampling for robust optimisation.
GECCO (Companion)
Kevin Anthony James Doherty, Khulood AlYahya, Jonathan E. Fieldsend, Ozgur E. Akman
2017 — conf
On the exploitation of search history and accumulative sampling in robust optimisation.
GECCO (Companion)
Khulood AlYahya, Kevin Anthony James Doherty, Jonathan E. Fieldsend, Ozgur E. Akman
2017 — conf
Optimisation and landscape analysis of computational biology models: a case study.
GECCO (Companion)
Kevin Anthony James Doherty, Khulood AlYahya, Ozgur E. Akman, Jonathan E. Fieldsend
2017 J jnl
Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combination.
BMC Syst. Biol.
Eleftherios Avramidis, Ozgur E. Akman
2015 J jnl
Dizzy-Beats: a Bayesian evidence analysis tool for systems biology.
Bioinform.
Stuart Aitken, Alastair M. Kilpatrick, Ozgur E. Akman
2014 — conf
A consensus approach to predict regulatory interactions.
BMEI
Suhaib Mohammed, Ozgur E. Akman, Zheng Rong Yang
2013 J jnl
Nested sampling for parameter inference in systems biology: application to an exemplar circadian model.
BMC Syst. Biol.
Stuart Aitken, Ozgur E. Akman
2013 J jnl
SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology.
Bioinform.
Richard R. Adams, Allan B. Clark, Azusa Yamaguchi, Neil Hanlon, Nikos Tsorman, Shakir Ali, Galina Lebedeva, Alexey N. Goltsov, Anatoly A. Sorokin, Ozgur E. Akman, Carl Troein, Andrew J. Millar, Igor Goryanin, Stephen Gilmore
2012 — conf
On the role of ultrasensitivity in biomolecular control systems.
CDC
Francesco Montefusco, Arno Steinacher, Ozgur E. Akman, Declan G. Bates, Orkun S. Soyer
2010 — conf
Complementary approaches to understanding the plant circadian clock
FBTC
Ozgur E. Akman, Maria Luisa Guerriero, Laurence Loewe, Carl Troein
2010 J jnl
Robustness from flexibility in the fungal circadian clock.
BMC Syst. Biol.
Ozgur E. Akman, David A. Rand, Paul E. Brown, Andrew J. Millar
2009 — conf
Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the
CMSB
Ozgur E. Akman, Federica Ciocchetta, Andrea Degasperi, Maria Luisa Guerriero
2006 J jnl
Nonlinear time series analysis of jerk congenital nystagmus.
J. Comput. Neurosci.
Ozgur E. Akman, David S. Broomhead, Richard A. Clement, Richard V. Abadi
2006 J jnl
Stability of the saccadic oculomotor system.
Biol. Cybern.
Dmitry Laptev, Ozgur E. Akman, Richard A. Clement