Ozan Irsoy

49 papers A* 4B 2C 1Misc 1Journal 25Unranked 14
YearRankTypeTitle / Venue / Authors
2025 A* conf
EMNLP
Ozan Irsoy, Pengxiang Cheng, Jennifer L. Chen, Daniel Preotiuc-Pietro, Shiyue Zhang, Duccio Pappadopulo
2025 J jnl
CoRR
Ozan Irsoy, Pengxiang Cheng, Jennifer L. Chen, Daniel Preotiuc-Pietro, Shiyue Zhang, Duccio Pappadopulo
2025 conf
ICCVW
Jaemin Cho, Debanjan Mahata, Ozan Irsoy, Yujie He, Mohit Bansal
2024 A* conf
EMNLP
Mark Dredze, Genta Indra Winata, Prabhanjan Kambadur, Shijie Wu, Ozan Irsoy, Steven Lu, Vadim Dabravolski, David S. Rosenberg, Sebastian Gehrmann
2024 J jnl
CoRR
Jaemin Cho, Debanjan Mahata, Ozan Irsoy, Yujie He, Mohit Bansal
2023 J jnl
CoRR
Shijie Wu, Ozan Irsoy, Steven Lu, Vadim Dabravolski, Mark Dredze, Sebastian Gehrmann, Prabhanjan Kambadur, David S. Rosenberg, Gideon Mann
2023 conf
EACL (Findings)
Marco Farina, Duccio Pappadopulo, Anant Gupta, Leslie Huang, Ozan Irsoy, Thamar Solorio
2023 J jnl
CoRR
Marco Farina, Duccio Pappadopulo, Anant Gupta, Leslie Huang, Ozan Irsoy, Thamar Solorio
2023 conf
ACL (1)
Shiyue Zhang, Shijie Wu, Ozan Irsoy, Steven Lu, Mohit Bansal, Mark Dredze, David S. Rosenberg
2023 J jnl
CoRR
Shiyue Zhang, Shijie Wu, Ozan Irsoy, Steven Lu, Mohit Bansal, Mark Dredze, David S. Rosenberg
2023 J jnl
CoRR
Adrian Benton, Tianze Shi, Ozan Irsoy, Igor Malioutov
2022 conf
S+SSPR
Ozan Irsoy, Ethem Alpaydin
2022 J jnl
CoRR
Ozan Irsoy, Ethem Alpaydin
2022 conf
EMNLP (Findings)
Adrian Benton, Tianze Shi, Ozan Irsoy, Igor Malioutov
2021 J jnl
CoRR
Duccio Pappadopulo, Lisa Bauer, Marco Farina, Ozan Irsoy, Mohit Bansal
2021 conf
*SEM
Duccio Pappadopulo, Lisa Bauer, Marco Farina, Ozan Irsoy, Mohit Bansal
2021 conf
NAACL-HLT
Tianze Shi, Adrian Benton, Igor Malioutov, Ozan Irsoy
2021 J jnl
CoRR
Tianze Shi, Adrian Benton, Igor Malioutov, Ozan Irsoy
2021 J jnl
Neurocomputing
Ozan Irsoy, Ethem Alpaydin
2021 conf
NAACL-HLT
Tianze Shi, Ozan Irsoy, Igor Malioutov, Lillian Lee
2021 J jnl
CoRR
Tianze Shi, Ozan Irsoy, Igor Malioutov, Lillian Lee
2020 J jnl
IEEE Trans. Neural Networks Learn. Syst.
Ozan Irsoy, Ethem Alpaydin
2020 conf
EMNLP (1)
Tianze Shi, Igor Malioutov, Ozan Irsoy
2020 J jnl
CoRR
Tianze Shi, Igor Malioutov, Ozan Irsoy
2020 J jnl
CoRR
Ozan Irsoy, Adrian Benton, Karl Stratos
2019 J jnl
CoRR
Ozan Irsoy, Rakesh Gosangi, Haimin Zhang, Mu-Hsin Wei, Peter Lund, Duccio Pappadopulo, Brendan Fahy, Neophytos Nephytou, Camilo Ortiz
2019 J jnl
CoRR
Ozan Irsoy
2018 conf
NAACL-HLT
Yi Yang, Ozan Irsoy, Kazi Shefaet Rahman
2018 J jnl
CoRR
Yi Yang, Ozan Irsoy, Kazi Shefaet Rahman
2018 J jnl
CoRR
Ozan Irsoy, Ethem Alpaydin
2018 conf
ICANN (1)
Alper Ahmetoglu, Ozan Irsoy, Ethem Alpaydin
2018 J jnl
CoRR
Ozan Irsoy, Ethem Alpaydin
2017
Deep Sequential and Structural Neural Models of Compositionality.
Ozan Irsoy
2017 J jnl
Neurocomputing
Ozan Irsoy, Ethem Alpaydin
2016 A* conf
ICML
Ankit Kumar, Ozan Irsoy, Peter Ondruska, Mohit Iyyer, James Bradbury, Ishaan Gulrajani, Victor Zhong, Romain Paulus, Richard Socher
2016 ch.
Machine Learning for Health Informatics
Olcay Taner Yildiz, Ozan Irsoy, Ethem Alpaydin
2015 J jnl
CoRR
Ankit Kumar, Ozan Irsoy, Peter Ondruska, Mohit Iyyer, James Bradbury, Ishaan Gulrajani, Victor Zhong, Romain Paulus, Richard Socher
2015 C conf
ACML
Ozan Irsoy, Ethem Alpaydin
2015 Misc conf
ICASSP
Hasim Sak, Andrew W. Senior, Kanishka Rao, Ozan Irsoy, Alex Graves, Françoise Beaufays, Johan Schalkwyk
2015 conf
ICLR (Poster)
Ozan Irsoy, Claire Cardie
2014 J jnl
CoRR
Ozan Irsoy, Ethem Alpaydin
2014 B conf
ICPR
Ozan Irsoy, Olcay Taner Yildiz, Ethem Alpaydin
2014 conf
NIPS
Ozan Irsoy, Claire Cardie
2014 J jnl
CoRR
Ozan Irsoy, Ethem Alpaydin
2014 A* conf
EMNLP
Ozan Irsoy, Claire Cardie
2013 J jnl
CoRR
Ozan Irsoy, Claire Cardie
2013 conf
TAC
Carmen Banea, Rada Mihalcea, Yoonjung Choi, Lingjia Deng, Janyce Wiebe, Ozan Irsoy, Detian Shi, Claire Cardie
2012 J jnl
IEEE ACM Trans. Comput. Biol. Bioinform.
Ozan Irsoy, Olcay Taner Yildiz, Ethem Alpaydin
2012 B conf
ICPR
Ozan Irsoy, Olcay Taner Yildiz, Ethem Alpaydin
redb/extractors/decompiler/DecompileBinja.py
← Index redb/extractors/decompiler/DecompileBinja.py python
import hashlib
import inspect
import json
import logging
import os
import signal
import time
from datetime import datetime, timezone
from typing import Dict, Any, Optional
from pathlib import Path
import subprocess
import sys

from redb.extractors.enum import Tag
from redb.extractors.extractor import Extractor
import magic
import pefile
from elftools.elf.elffile import ELFFile

# Import our BinjaDecompiler (conditional)
from redb.extractors.decompiler.bninja.decompiler import BinaryNinjaDecompiler

class DecompileBinja(Extractor):
    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        filetype=None,
        decompile_modules=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
        )
        self.log.debug(inspect.currentframe().f_code.co_name)

        # Check if Binary Ninja is available
       # if not BINARYNINJA_AVAILABLE:
        #     self.log.error("Binary Ninja is not available in this container")
        #    raise ImportError(
        #        "Binary Ninja module not found - not available in feature extraction container"
        #    )
        self.analysis_results = None
        self.binja_decompiler = None
        self.filetype = filetype
        self.decompile_modules = decompile_modules or {"all"}
        self.goresym_data = None
        self.goresym_output_path = None

        # Convert TIMEOUT to integer with a default of 1200 seconds (20 minutes)
        try:
            self.BINJA_TIMEOUT = int(os.getenv("BINJA_TIMEOUT", "1200"))
        except ValueError:
            self.log.warning(
                "Invalid BINJA_TIMEOUT value, using default of 1200 seconds"
            )
            self.BINJA_TIMEOUT = 1200

        # Convert TIMEOUT to integer with a default of 1200 seconds (20 minutes)
        try:
            self.DECOMPILE_EXTRACTOR_TIMEOUT = int(
                os.getenv("DECOMPILE_EXTRACTOR_TIMEOUT", "2580")
            )
        except ValueError:
            self.log.warning(
                "Invalid DECOMPILE_EXTRACTOR_TIMEOUT value, using default of 2580 seconds"
            )
            self.DECOMPILE_EXTRACTOR_TIMEOUT = 2580

    def __enter__(self):
        return self

    def __exit__(self, exc_type, exc_val, exc_tb):
        self.cleanup_run()

    def calculate_md5(self, input_str):
        """Calculate MD5 hash of a string."""
        return hashlib.md5(input_str.encode("utf-8")).hexdigest()

    def is_dotnet(self):
        """Check if the binary is a .NET assembly.

        Returns:
            bool: True if the file is a .NET assembly, False otherwise
        """
        try:
            if self.filetype == "pebin":
                file_type = magic.from_buffer(self.binary)
                if ".Net" in file_type:
                    return True
                pe = pefile.PE(self.filepath)
                for entry in pe.OPTIONAL_HEADER.DATA_DIRECTORY:
                    # IMAGE_DIRECTORY_ENTRY_COM_DESCRIPTOR is typically 14
                    if (
                        entry.name == "IMAGE_DIRECTORY_ENTRY_COM_DESCRIPTOR"
                        and entry.Size > 0
                    ):
                        return True
                return False
            return False
        except AttributeError as e:
            self.log.error(
                f"AttributeError error dotnet file {self.hash.sha256} Full error : {e}"
            )
            return False

    def is_golang(self):
        """Check if the binary is a Go-compiled binary (heuristic).

        Supports PE and ELF binaries.
        """
        try:
            if self.filetype == "pebin":
                pe = pefile.PE(self.filepath)
                signatures = [b"Go build ID:", b"runtime.main", b"main.main"]

                for section in pe.sections:
                    data = section.get_data()
                    if any(sig in data for sig in signatures):
                        return True

                return False

            elif self.filetype == "elf":
                with open(self.filepath, "rb") as f:
                    elf = ELFFile(f)

                    # 1. Section-based checks
                    section_names = [sec.name for sec in elf.iter_sections()]
                    if any(
                        s in section_names
                        for s in (".note.go.buildid", ".gopclntab")
                    ):
                        return True

                    # 2. String scan in loadable sections
                    signatures = [
                        b"Go build ID:",
                        b"runtime.main",
                        b"runtime.goexit",
                        b"runtime.morestack",
                        b"main.main",
                    ]

                    for sec in elf.iter_sections():
                        if sec["sh_flags"] & 0x2:  # SHF_ALLOC
                            data = sec.data()
                            if any(sig in data for sig in signatures):
                                return True

                return False

            return False

        except Exception as e:
            self.log.error(
                f"Golang detection error {self.hash.sha256}: {e}"
            )
            return False

    def cleanup_run(self):
        """Clean up after analysis."""
        try:
            # BinaryNinjaDecompiler uses context manager pattern (__enter__/__exit__)
            # Cleanup happens automatically when exiting the 'with' block
            self.binja_decompiler = None

            # Clean up goresym temp file if it exists (keep in debug mode)
            if self.goresym_output_path and os.path.exists(self.goresym_output_path):
                if self.log.isEnabledFor(logging.DEBUG):
                    self.log.debug(f"Debug mode: keeping goresym output at {self.goresym_output_path}")
                else:
                    os.remove(self.goresym_output_path)
                    self.goresym_output_path = None

            # Force garbage collection
            import gc

            gc.collect()

        except Exception as e:
            self.log.error(f"Error in cleanup: {e}")

    def run_goresym(self, binary_path, output_json_path):
        """
            Run goresym on a Go binary and export its JSON output to a file.
            binary_path: path to the Go binary to analyze
            output_json_path: path where the JSON output will be saved
            """
        binary_path = str(Path(binary_path).resolve())
        output_json_path = str(Path(output_json_path).resolve())
        goresym_path = os.getenv("GORESYM_PATH", "GoReSym")

        try:
            # Example: goresym -t json /path/to/binary
            self.log.info("DEBUG: starting GoReSym")
            result = subprocess.run(
                [goresym_path, binary_path],
                stdout=subprocess.PIPE,
                stderr=subprocess.PIPE,
                text=True,
            )
        except FileNotFoundError:
            self.log.error("Error: 'goresym' not found in PATH. Make sure it is installed.")
            raise
        except subprocess.CalledProcessError as e:
            self.log.error("Error during goresym execution:")
            self.log.error(e.stderr)


        # Assuming goresym emits valid JSON to stdout.
        try:
            parsed = json.loads(result.stdout)
            # Store parsed JSON for later export to ClickHouse
            self.goresym_data = parsed
        except json.JSONDecodeError:
            # If it's not valid JSON, save the raw output instead.
            self.log.error("Warning: goresym output is not valid JSON; saving raw.")
            with open(output_json_path, "w", encoding="utf-8") as f:
                f.write(result.stdout)
            return

        # Save pretty-printed JSON for readability and debugging (used by BinaryNinja)
        with open(output_json_path, "w", encoding="utf-8") as f:
            json.dump(parsed, f, ensure_ascii=False, indent=2)
        self.goresym_output_path = output_json_path

        self.log.debug(f"goresym output saved to: {output_json_path}")

    def analyze_binary(self) -> Optional[Dict[str, Any]]:
        """Run Binary Ninja analysis and return results."""
        self.log.debug("Starting binary analysis")
        # if the binary is dotnet (only PE)
        if self.is_dotnet():
            self.log.debug("Skipping .NET binary - decompilation not supported")
            return None

        output_json_path = None
        ## if golang: run goresym
        try:
            if self.is_golang():
                output_json_path = "./goResym.json"
                self.run_goresym(self.filepath, output_json_path)
        except Exception as e:
            self.log.error(f"Error on GoReSym extraction: {e}")

        try:
            # Use BinaryNinjaDecompiler as a context manager to ensure proper setup/cleanup
            with BinaryNinjaDecompiler(
                filepath=self.filepath,
                timeout=self.BINJA_TIMEOUT,
                log=self.log,
                exporters=self.exporters,
                index_prefix=self.index_prefix,
                filetype=self.filetype,
                goresym=output_json_path,
                decompile_modules=self.decompile_modules,
            ) as decompiler:
                self.binja_decompiler = decompiler

                if decompiler.extract():
                    # Store results before context manager exits
                    results = decompiler.analysis_results
                    return results
                else:
                    self.log.error("BinaryNinjaDecompiler extraction failed")
                    return None

        except Exception as e:
            self.log.error(f"Error in Binary Ninja analysis: {e}")
            import traceback
            self.log.error(f"Traceback: {traceback.format_exc()}")
            return None

        finally:
            self.cleanup_run()

    def extract(self):
        """Extract and process all analysis results."""
        self.log.debug(inspect.currentframe().f_code.co_name)

        # Create a flag to track if extraction completed
        extraction_completed = False
        extraction_result = False
        extraction_error = None

        # Define the extraction process as a separate function
        def do_extraction():
            nonlocal extraction_completed, extraction_result, extraction_error
            try:
                results = self.analyze_binary()
                if not results:
                    extraction_result = False
                else:
                    self.analysis_results = results
                    # Add file hashes from parent Extractor class to analysis results
                    self.analysis_results["sha256"] = self.sha256
                    self.analysis_results["sha1"] = self.sha1
                    self.analysis_results["md5"] = self.md5
                    extraction_result = True
            except Exception as e:
                extraction_error = e
                extraction_result = False
            finally:
                extraction_completed = True

        # Run extraction directly with signal-based timeout (no thread overhead).
        # SIGALRM is delivered by the OS, so there's no GIL contention or polling.
        old_handler = signal.getsignal(signal.SIGALRM)
        def _timeout_handler(signum, frame):
            raise TimeoutError("Extraction timed out")

        signal.signal(signal.SIGALRM, _timeout_handler)
        signal.alarm(self.DECOMPILE_EXTRACTOR_TIMEOUT)
        try:
            do_extraction()
        except TimeoutError:
            self.log.error(
                f"Extraction timed out after {self.DECOMPILE_EXTRACTOR_TIMEOUT} seconds"
            )
            self.cleanup_run()
            return None
        finally:
            signal.alarm(0)
            signal.signal(signal.SIGALRM, old_handler)

        if extraction_error:
            self.log.error(f"Error in extraction: {extraction_error}")
            return None

        # Return the actual analysis results, not just a boolean
        return self.analysis_results if extraction_result else None

    def prepare_export_data(self, exporter_type: str) -> Any:
        """Prepare data for database export."""
        self.log.debug(inspect.currentframe().f_code.co_name)
        if not self.analysis_results:
            return None

        # # Delegate to the BinjaDecompiler for consistent export formatting
        # if self.binja_decompiler:
        #     return self.binja_decompiler.prepare_export_data(exporter_type)
        # else:
        #     self.log.error("BinjaDecompiler not available for export preparation")
        #     return None

        if exporter_type == "ClickHouseExporter":
            now = datetime.now(timezone.utc)

            def prepare_array_field(value, array_type):
                """Helper to prepare array fields with proper null handling"""
                if value is None:
                    return []
                return value

            # Add a helper function to handle empty strings
            def ensure_not_empty(value, default="UNKNOWN"):
                """Ensure a string value is not empty"""
                if value is None or value == "":
                    return default
                return value

            def prepare_register_usage_map(register_dict):
                """Convert register usage dict to Map format with tuples
                Input: {"rbx": {"reads": 3, "writes": 1}, ...}
                Output: {"rbx": (3, 1), ...}
                """
                if not register_dict:
                    return {}
                return {
                    reg: (info.get("reads", 0), info.get("writes", 0))
                    for reg, info in register_dict.items()
                }


            decompile_modules = getattr(self, "decompile_modules", {"all"})
            run_all = "all" in decompile_modules
            run_decompilation = run_all or "decompilation" in decompile_modules
            run_disassembly = run_all or "disassembly" in decompile_modules
            run_llil = run_all or "llil" in decompile_modules
            run_cfg = run_all or "cfg" in decompile_modules
            run_strings = run_all or "strings" in decompile_modules

            export = {"multi_table": True}

            # Decompilation tables
            if run_decompilation:
                export["decompiled_content"] = {
                    "table": "code_binja_decompiled_functions_content",
                    "data": [
                        [
                            f["decompiled_function_hash"],
                            f["decompiled_function"],
                            f["function_type"],
                            f.get("flattened_score"),
                            f.get("mba_score"),
                            now,
                        ]
                        for f in self.analysis_results["decompiled"]
                    ],
                    "column_names": [
                        "decompiled_function_hash",
                        "decompiled_function",
                        "function_type",
                        "flattened_score",
                        "mba_score",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "String",
                        "Enum8('USER'=1, 'LIBRARY'=2, 'THUNK'=3, 'EXTERNAL'=4, 'UNKNOWN'=5)",
                        "Nullable(Float64)",
                        "Nullable(Float64)",
                        "DateTime64(3, 'UTC')",
                    ],
                }
                export["decompiled_refs"] = {
                    "table": "code_binja_decompiled_functions_references",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            self.analysis_results["sha1"],
                            self.analysis_results["md5"],
                            f["decompiled_function_hash"],
                            f.get("disassembled_function_hash"),
                            f["decompiled_function_name"],
                            f["decompiled_function_prototype"],
                            f["decompiled_function_address"],
                            prepare_array_field(f.get("functions_caller"), "Array(String)"),
                            prepare_array_field(f.get("functions_call"), "Array(String)"),
                            now,
                        ]
                        for f in self.analysis_results["decompiled"]
                    ],
                    "column_names": [
                        "sha256",
                        "sha1",
                        "md5",
                        "decompiled_function_hash",
                        "disassembled_function_hash",
                        "decompiled_function_name",
                        "decompiled_function_prototype",
                        "decompiled_function_address",
                        "functions_caller",
                        "functions_call",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "FixedString(40)",
                        "FixedString(32)",
                        "FixedString(64)",
                        "Nullable(FixedString(64))",
                        "LowCardinality(String)",
                        "LowCardinality(String)",
                        "UInt64",
                        "Array(String)",
                        "Array(String)",
                        "DateTime64(3, 'UTC')",
                    ],
                }

            # Disassembly tables
            if run_disassembly:
                export["disassembled_content"] = {
                    "table": "code_binja_disassembled_functions_content",
                    "data": [
                        [
                            f["disassembled_function_hash"],
                            f.get("disassembled_function", ""),
                            f.get("disassembled_function_no_addresses", ""),
                            f.get("function_type", "UNKNOWN"),
                            f.get("instructions_count", 0),
                            prepare_array_field(
                                f.get("instructions_types"), "LowCardinality(String)"
                            ),
                            f.get("control_flow_count", 0),
                            prepare_array_field(
                                f.get("memory_access_pattern"), "LowCardinality(String)"
                            ),
                            prepare_array_field(
                                f.get("register_usage"), "LowCardinality(String)"
                            ),
                            f.get("data_references_count", 0),
                            f.get("max_block_size"),
                            f.get("num_calls"),
                            f.get("stack_size"),
                            now,
                        ]
                        for f in self.analysis_results["disassembled"]
                    ],
                    "column_names": [
                        "disassembled_function_hash",
                        "disassembled_function",
                        "disassembled_function_no_addresses",
                        "function_type",
                        "instructions_count",
                        "instructions_types",
                        "control_flow_count",
                        "memory_access_pattern",
                        "register_usage",
                        "data_references_count",
                        "max_block_size",
                        "num_calls",
                        "stack_size",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "String",
                        "String",
                        "Enum8('USER'=1, 'LIBRARY'=2, 'THUNK'=3, 'EXTERNAL'=4, 'UNKNOWN'=5)",
                        "UInt32",
                        "Array(LowCardinality(String))",
                        "UInt32",
                        "Array(LowCardinality(String))",
                        "Array(LowCardinality(String))",
                        "UInt32",
                        "Nullable(UInt32)",
                        "Nullable(UInt32)",
                        "Nullable(Int32)",
                        "DateTime64(3, 'UTC')",
                    ],
                }
                export["disassembled_refs"] = {
                    "table": "code_binja_disassembled_functions_references",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            self.analysis_results["sha1"],
                            self.analysis_results["md5"],
                            f["disassembled_function_hash"],
                            f.get("decompiled_function_hash"),
                            f["disassembled_function_name"],
                            f["disassembled_function_address"],
                            f.get("tlsh_disassembly"),
                            f.get("tlsh_llil"),
                            now,
                        ]
                        for f in self.analysis_results["disassembled"]
                    ],
                    "column_names": [
                        "sha256",
                        "sha1",
                        "md5",
                        "disassembled_function_hash",
                        "decompiled_function_hash",
                        "disassembled_function_name",
                        "disassembled_function_address",
                        "tlsh_disassembly",
                        "tlsh_llil",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "FixedString(40)",
                        "FixedString(32)",
                        "FixedString(64)",
                        "Nullable(FixedString(64))",
                        "LowCardinality(String)",
                        "UInt64",
                        "Nullable(FixedString(72))",
                        "Nullable(FixedString(72))",
                        "DateTime64(3, 'UTC')",
                    ],
                }
                # Function similarity metrics table (derived from disassembly data)
                # Lookup maps to join LLIL/MLIL features by disassembled_function_hash
                llil_by_hash = {
                    l.get("disassembled_function_hash"): l
                    for l in self.analysis_results.get("llil", [])
                    if l and l.get("disassembled_function_hash")
                }
                mlil_by_hash = {
                    m.get("disassembled_function_hash"): m
                    for m in self.analysis_results.get("mlil", [])
                    if m and m.get("disassembled_function_hash")
                }

                export["function_similarity_metrics"] = {
                    "table": "code_binja_function_similarity_metrics",
                    "data": [
                        [
                            f["disassembled_function_hash"],
                            f.get("cyclomatic_complexity"),
                            f.get("tlsh_disassembly"),
                            f.get("tlsh_llil"),
                            prepare_array_field(f.get("minhash"), "Array(UInt8)"),
                            (llil_by_hash.get(f["disassembled_function_hash"]) or {}).get("tlsh_llil"),
                            (llil_by_hash.get(f["disassembled_function_hash"]) or {}).get(
                                "tlsh_instruction_typed_llil"),
                            prepare_array_field(
                                (llil_by_hash.get(f["disassembled_function_hash"]) or {}).get("minhash_llil_skeleton"),
                                "Array(UInt8)",
                            ),
                            prepare_array_field(
                                (llil_by_hash.get(f["disassembled_function_hash"]) or {}).get("minhash_llil_typed"),
                                "Array(UInt8)",
                            ),
                            (mlil_by_hash.get(f["disassembled_function_hash"]) or {}).get("tlsh_mlil_skeleton"),
                            (mlil_by_hash.get(f["disassembled_function_hash"]) or {}).get("tlsh_mlil_typed"),
                            prepare_array_field(
                                (mlil_by_hash.get(f["disassembled_function_hash"]) or {}).get("minhash_mlil_skeleton"),
                                "Array(UInt8)",
                            ),
                            prepare_array_field(
                                (mlil_by_hash.get(f["disassembled_function_hash"]) or {}).get("minhash_mlil_typed"),
                                "Array(UInt8)",
                            ),
                            now,
                        ]
                        for f in self.analysis_results.get("disassembled", [])
                    ],
                    "column_names": [
                        "disassembled_function_hash",
                        "cyclomatic_complexity",
                        "tlsh_disassembly",
                        "tlsh_llil",
                        "minhash",
                        "tlsh_llil_new",
                        "tlsh_instruction_typed_llil",
                        "minhash_llil_skeleton",
                        "minhash_llil_typed",
                        "tlsh_mlil_skeleton",
                        "tlsh_mlil_typed",
                        "minhash_mlil_skeleton",
                        "minhash_mlil_typed",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "Nullable(UInt16)",
                        "Nullable(FixedString(72))",
                        "Nullable(FixedString(72))",
                        "Array(UInt8)",
                        # new
                        "Nullable(FixedString(72))",
                        "Nullable(FixedString(72))",
                        "Array(UInt8)",
                        "Array(UInt8)",
                        "Nullable(FixedString(72))",
                        "Nullable(FixedString(72))",
                        "Array(UInt8)",
                        "Array(UInt8)",
                        "DateTime64(3, 'UTC')",
                    ],
                }


            # LLIL tables
            if run_llil:
                export["llil_content"] = {
                    "table": "code_binja_llil_functions_content",
                    "data": [
                        [
                            f["sha256_llil"],
                            f["function_type"],
                            prepare_array_field(
                                f.get("instructions_types_llil"), "LowCardinality(String)"
                            ),
                            f.get("control_flow_count_llil", 0),
                            prepare_array_field(
                                f.get("memory_access_pattern_llil"), "LowCardinality(String)"
                            ),
                            prepare_register_usage_map(f.get("register_usage", {})),
                            f.get("total_reg_reads", 0),
                            f.get("total_reg_written", 0),
                            f.get("data_references_count", 0),
                            f.get("max_block_size"),
                            f.get("num_calls"),
                            f.get("stack_size"),
                            prepare_array_field(f.get("body_llil_vector"), "Array(Tuple(UInt32, Array(UInt16)))"),
                            now,
                        ]
                        for f in self.analysis_results.get("llil", [])
                    ],
                    "column_names": [
                        "llil_function_hash",
                        "function_type",
                        "instructions_types_llil",
                        "control_flow_count_llil",
                        "memory_access_pattern_llil",
                        "register_usage_llil",
                        "total_reg_reads",
                        "total_reg_written",
                        "data_references_count",
                        "max_block_size",
                        "num_calls",
                        "stack_size",
                        "body_llil_vector",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "Enum8('USER'=1, 'LIBRARY'=2, 'THUNK'=3, 'EXTERNAL'=4, 'UNKNOWN'=5)",
                        "Array(LowCardinality(String))",
                        "UInt32",
                        "Array(LowCardinality(String))",
                        "Map(LowCardinality(String), Tuple(UInt32, UInt32))",
                        "UInt32",
                        "UInt32",
                        "UInt32",
                        "Nullable(UInt32)",
                        "Nullable(UInt32)",
                        "Nullable(Int32)",
                        "Array(Tuple(UInt32, Array(UInt16)))",
                        "DateTime64(3, 'UTC')",
                    ],
                }
                export["llil_refs"] = {
                    "table": "code_binja_llil_functions_references",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            self.analysis_results["sha1"],
                            self.analysis_results["md5"],
                            f.get("sha256_llil"),
                            f.get("disassembled_function_hash"),
                            f.get("function_address"),
                            f.get("tlsh_disassembly"),
                            f.get("tlsh_llil"),
                            now,
                        ]
                        for f in self.analysis_results.get("llil", [])
                    ],
                    "column_names": [
                        "sha256",
                        "sha1",
                        "md5",
                        "llil_function_hash",
                        "disassembled_function_hash",
                        "function_address",
                        "tlsh_disassembly",
                        "tlsh_llil",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "FixedString(40)",
                        "FixedString(32)",
                        "Nullable(FixedString(64))",
                        "FixedString(64)",
                        "UInt64",
                        "Nullable(FixedString(72))",
                        "Nullable(FixedString(72))",
                        "DateTime64(3, 'UTC')",
                    ],
                }

            # Errors table (always include if per-function loop ran)
            if run_decompilation or run_disassembly or run_llil or run_cfg:
                export["function_analysis_errors"] = {
                    "table": "new_function_analysis_errors_binja",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            f["function_name"],
                            f["function_address"],
                            f.get("error_location", "unknown"),
                            f.get("error_message", ""),
                            f.get("error_details", ""),
                            f.get("error_type", "unknown"),
                            self.calculate_md5(
                                f"{f.get('error_message', '')}{f['function_name']}{f['function_address']}{f.get('error_location', 'unknown')}"
                            ),
                            "new",
                            now,
                        ]
                        for f in self.analysis_results.get("errors", [])
                    ],
                    "column_names": [
                        "sha256",
                        "function_name",
                        "function_address",
                        "error_location",
                        "error_message",
                        "error_details",
                        "error_type",
                        "error_hash",
                        "status",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "Nullable(String)",
                        "UInt64",
                        "LowCardinality(String)",
                        "Nullable(String)",
                        "Nullable(String)",
                        "Nullable(String)",
                        "FixedString(32)",
                        "Enum8('new'=1, 'investigating'=2, 'fixed'=3, 'wontfix'=4)",
                        "DateTime64(3, 'UTC')",
                    ],
                }

            # Strings table
            if run_strings:
                export["strings_raw"] = {
                    "table": "code_binja_strings_raw",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            s["string"],
                            s["string_raw"],
                            s["string_encoding"],
                            s["string_offset"],
                            s["string_length"],
                            s["string_raw_length"],
                            s["string_entropy"],
                        ]
                        for s in self.analysis_results.get("strings", [])
                    ],
                    "column_names": [
                        "sha256",
                        "string",
                        "string_raw",
                        "string_encoding",
                        "string_offset",
                        "string_length",
                        "string_raw_length",
                        "string_entropy",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "String",
                        "String",
                        "LowCardinality(String)",
                        "UInt64",
                        "UInt32",
                        "UInt32",
                        "Float32",
                    ],
                }

            # CFG function-level features table
            if run_cfg:
                export["cfg_functions"] = {
                    "table": "code_binja_cfg_functions",
                    "data": [
                        [
                            cfg.get("disassembled_function_hash"),
                            cfg["cfg_topology_hash"],
                            cfg["block_count"],
                            cfg["edge_count"],
                            cfg.get("llil_total_operations", 0),
                            cfg.get("call_count", 0),
                            cfg["cyclomatic_complexity"],
                            cfg.get("loop_count", 0),
                            cfg.get("max_depth", 0),
                            cfg.get("max_fan_out", 0),
                            cfg.get("md_index_topdown", 0),
                            cfg.get("md_index_bottomup", 0),
                            cfg.get("prime_product_llil", 0),
                            cfg.get("cfg_feature_tlsh"),
                            cfg.get("wl_minhash", []),
                            cfg.get("bb_features", []),
                            cfg.get("cfg_adjacency", []),
                            now,
                        ]
                        for cfg in self.analysis_results.get("cfg", [])
                        if cfg is not None
                    ],
                    "column_names": [
                        "disassembled_function_hash",
                        "cfg_topology_hash",
                        "block_count",
                        "edge_count",
                        "llil_total_operations",
                        "call_count",
                        "cyclomatic_complexity",
                        "loop_count",
                        "max_depth",
                        "max_fan_out",
                        "md_index_topdown",
                        "md_index_bottomup",
                        "prime_product_llil",
                        "cfg_feature_tlsh",
                        "wl_minhash",
                        "bb_features",
                        "cfg_adjacency",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "FixedString(16)",
                        "UInt16",
                        "UInt16",
                        "UInt32",
                        "UInt16",
                        "UInt16",
                        "UInt8",
                        "UInt16",
                        "UInt8",
                        "UInt64",
                        "UInt64",
                        "UInt64",
                        "Nullable(FixedString(72))",
                        "Array(UInt8)",
                        "Array(Array(UInt16))",
                        "Array(UInt32)",
                        "DateTime64(3, 'UTC')",
                    ],
                }

            # GoReSym metadata table (only if goresym data exists)
            if self.goresym_data:
                export["golang_metadata"] = {
                    "table": "redb_golang_metadata",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            json.dumps(self.goresym_data),
                            now,
                        ]
                    ],
                    "column_names": [
                        "sha256",
                        "goresym",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "JSON",
                        "DateTime64(3, 'UTC')",
                    ],
                }

            return export

    def tag(self) -> str:
        """Return the tag for this extractor."""
        return Tag.DECOMPILED.value

    def get_clickhouse_table(self) -> str:
        """Not used directly as we're handling multiple tables."""
        pass


if __name__ == "__main__":
    # Setup basic logging
    import logging
    import time

    logging.basicConfig(level=logging.INFO)
    logger = logging.getLogger("DecompileBinja")

    # Parse command line arguments
    import argparse

    parser = argparse.ArgumentParser(description="Binary Ninja Decompiler Wrapper")
    parser.add_argument("filepath", help="Path to the binary file to analyze")
    parser.add_argument(
        "--output", "-o", help="Output JSON file path (default: stdout)"
    )
    parser.add_argument(
        "--timeout",
        "-t",
        type=int,
        default=1200,
        help="Analysis timeout in seconds (default: 1200)",
    )
    args = parser.parse_args()
    start = time.perf_counter()
    # Create and run the extractor
    with DecompileBinja(args.filepath, logger) as extractor:
        success = extractor.extract()
        end = time.perf_counter()
        if not success:
            logger.error("Analysis failed")
            exit(1)

        # Output results
        if args.output:
            with open(args.output, "w") as f:
                json.dump(extractor.analysis_results, f)
            logger.info(f"Results written to {args.output}")
        else:
            print((extractor.analysis_results))
            with open("diff", "w") as f:
                f.write(str(f"{end - start:.3f} seconds"))