Owen J. L. Rackham

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
Personalized uncertainty quantification in artificial intelligence.
Nat. Mac. Intell.
Tapabrata Chakraborti, Christopher R. S. Banerji, Ariane Marandon, Vicky Hellon, Robin Mitra, Brieuc Lehmann, Leandra Bräuninger, Sarah F. McGough, Cagatay Turkay, Alejandro F. Frangi, Ginestra Bianconi, Weizi Li, Owen J. L. Rackham, Deepak Parashar, Chris Harbron, Ben D. MacArthur
2024 J jnl
Mask prior-guided denoising diffusion improves inverse protein folding.
CoRR
Peizhen Bai, Filip Miljkovic, Xianyuan Liu, Leonardo De Maria, Rebecca Croasdale-Wood, Owen J. L. Rackham, Haiping Lu
2022 J jnl
CLIPreg: constructing translational regulatory networks from CLIP-, Ribo- and RNA-seq.
Bioinform.
Baptiste Kerouanton, Sebastian Schäfer, Lena Ho, Sonia Chothani, Owen J. L. Rackham
2021 J jnl
ShinyCell: simple and sharable visualization of single-cell gene expression data.
Bioinform.
John F. Ouyang, Uma S. Kamaraj, Elaine Y. Cao, Owen J. L. Rackham
2020 J jnl
GeneSwitches: ordering gene expression and functional events in single-cell experiments.
Bioinform.
Elaine Y. Cao, John F. Ouyang, Owen J. L. Rackham
2017 J jnl
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.
Nucleic Acids Res.
Marina Lizio, Jayson Harshbarger, Imad Abugessaisa, Shuei Noguchi, Atsushi Kondo, Jessica Severin, Chris Mungall, David J. Arenillas, Anthony Mathelier, Yulia A. Medvedeva, Andreas Lennartsson, Finn Drabløs, Jordan A. Ramilowski, Owen J. L. Rackham, Julian Gough, Robin Andersson, Albin Sandelin, Hans Ienasescu, Hiromasa Ono, Hidemasa Bono, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, Takeya Kasukawa, Hideya Kawaji
2016 J jnl
Web-based Gene Pathogenicity Analysis (WGPA): a web platform to interpret gene pathogenicity from personal genome data.
Bioinform.
Juan J. Diaz-Montana, Owen J. L. Rackham, Norberto Díaz-Díaz, Enrico Petretto
2015 J jnl
Genome3D: exploiting structure to help users understand their sequences.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Domenico Cozzetto, Jose M. Dana, Ioannis Filippis, Julian Gough, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Jaina Mistry, Alexey G. Murzin, Bernardo Ochoa-Montaño, Matt E. Oates, Marco Punta, Owen J. L. Rackham, Jonathan Stahlhacke, Michael J. E. Sternberg, Sameer Velankar, Christine A. Orengo
2015 J jnl
The SUPERFAMILY 1.75 database in 2014: a doubling of data.
Nucleic Acids Res.
Matt E. Oates, Jonathan Stahlhacke, Dimitrios V. Vavoulis, Ben Smithers, Owen J. L. Rackham, Adam J. Sardar, Jan Zaucha, Natalie Thurlby, Hai Fang, Julian Gough
2015 J jnl
WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools.
Bioinform.
Owen J. L. Rackham, Petros Dellaportas, Enrico Petretto, Leonardo Bottolo
2013 J jnl
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Alison L. Cuff, Jose M. Dana, Ioannis Filippis, Julian Gough, Sarah Hunter, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Alex L. Mitchell, Alexey G. Murzin, Bernardo Ochoa-Montaño, Owen J. L. Rackham, James Smith, Michael J. E. Sternberg, Sameer Velankar, Corin Yeats, Christine A. Orengo
2011 J jnl
SUPERFAMILY 1.75 including a domain-centric gene ontology method.
Nucleic Acids Res.
David A. de Lima Morais, Hai Fang, Owen J. L. Rackham, Derek Wilson, Ralph Pethica, Cyrus Chothia, Julian Gough