Owen J. L. Rackham

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
Nat. Mac. Intell.
Tapabrata Chakraborti, Christopher R. S. Banerji, Ariane Marandon, Vicky Hellon, Robin Mitra, Brieuc Lehmann, Leandra Bräuninger, Sarah F. McGough, Cagatay Turkay, Alejandro F. Frangi, Ginestra Bianconi, Weizi Li, Owen J. L. Rackham, Deepak Parashar, Chris Harbron, Ben D. MacArthur
2024 J jnl
CoRR
Peizhen Bai, Filip Miljkovic, Xianyuan Liu, Leonardo De Maria, Rebecca Croasdale-Wood, Owen J. L. Rackham, Haiping Lu
2022 J jnl
Bioinform.
Baptiste Kerouanton, Sebastian Schäfer, Lena Ho, Sonia Chothani, Owen J. L. Rackham
2021 J jnl
Bioinform.
John F. Ouyang, Uma S. Kamaraj, Elaine Y. Cao, Owen J. L. Rackham
2020 J jnl
Bioinform.
Elaine Y. Cao, John F. Ouyang, Owen J. L. Rackham
2017 J jnl
Nucleic Acids Res.
Marina Lizio, Jayson Harshbarger, Imad Abugessaisa, Shuei Noguchi, Atsushi Kondo, Jessica Severin, Chris Mungall, David J. Arenillas, Anthony Mathelier, Yulia A. Medvedeva, Andreas Lennartsson, Finn Drabløs, Jordan A. Ramilowski, Owen J. L. Rackham, Julian Gough, Robin Andersson, Albin Sandelin, Hans Ienasescu, Hiromasa Ono, Hidemasa Bono, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, Takeya Kasukawa, Hideya Kawaji
2016 J jnl
Bioinform.
Juan J. Diaz-Montana, Owen J. L. Rackham, Norberto Díaz-Díaz, Enrico Petretto
2015 J jnl
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Domenico Cozzetto, Jose M. Dana, Ioannis Filippis, Julian Gough, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Jaina Mistry, Alexey G. Murzin, Bernardo Ochoa-Montaño, Matt E. Oates, Marco Punta, Owen J. L. Rackham, Jonathan Stahlhacke, Michael J. E. Sternberg, Sameer Velankar, Christine A. Orengo
2015 J jnl
Nucleic Acids Res.
Matt E. Oates, Jonathan Stahlhacke, Dimitrios V. Vavoulis, Ben Smithers, Owen J. L. Rackham, Adam J. Sardar, Jan Zaucha, Natalie Thurlby, Hai Fang, Julian Gough
2015 J jnl
Bioinform.
Owen J. L. Rackham, Petros Dellaportas, Enrico Petretto, Leonardo Bottolo
2013 J jnl
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Alison L. Cuff, Jose M. Dana, Ioannis Filippis, Julian Gough, Sarah Hunter, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Alex L. Mitchell, Alexey G. Murzin, Bernardo Ochoa-Montaño, Owen J. L. Rackham, James Smith, Michael J. E. Sternberg, Sameer Velankar, Corin Yeats, Christine A. Orengo
2011 J jnl
Nucleic Acids Res.
David A. de Lima Morais, Hai Fang, Owen J. L. Rackham, Derek Wilson, Ralph Pethica, Cyrus Chothia, Julian Gough
redb/extractors/decompiler/apk/apktool_wrapper.py
← Index redb/extractors/decompiler/apk/apktool_wrapper.py python
"""Apktool disassembler subprocess wrapper.

Manages apktool subprocess execution for smali disassembly,
following the CAPA extractor subprocess pattern.
"""

import os
import signal
import subprocess
from typing import List, Optional


class ApktoolDisassembler:
    """Subprocess wrapper for apktool smali disassembly."""

    def __init__(
        self, apktool_path: str = None, timeout: int = None, log=None
    ):
        self.apktool_path = apktool_path or os.getenv("APKTOOL_PATH", "apktool")
        self.timeout = timeout or int(os.getenv("APKTOOL_TIMEOUT", "120"))
        self.log = log

    def disassemble(self, apk_path: str, output_dir: str) -> bool:
        """Run apktool disassembly on an APK file.

        Returns True on success, False on failure.
        """
        cmd = [
            self.apktool_path,
            "d",
            "--no-res",
            "--force",
            "--output", output_dir,
            apk_path,
        ]

        try:
            process = subprocess.Popen(
                cmd,
                stdout=subprocess.PIPE,
                stderr=subprocess.PIPE,
                text=True,
                preexec_fn=os.setsid,
            )

            try:
                stdout, stderr = process.communicate(timeout=self.timeout)
                if process.returncode != 0:
                    if self.log:
                        self.log.warning(
                            f"apktool returned non-zero exit code {process.returncode}: "
                            f"{stderr[:500] if stderr else 'no stderr'}"
                        )
                    return False
                return True

            except subprocess.TimeoutExpired:
                if self.log:
                    self.log.error(
                        f"apktool timed out after {self.timeout}s"
                    )
                try:
                    os.killpg(os.getpgid(process.pid), signal.SIGTERM)
                    process.wait(timeout=3)
                except (ProcessLookupError, subprocess.TimeoutExpired):
                    try:
                        os.killpg(os.getpgid(process.pid), signal.SIGKILL)
                    except ProcessLookupError:
                        pass
                return False

        except FileNotFoundError:
            if self.log:
                self.log.error(
                    f"apktool not found at '{self.apktool_path}'. "
                    "Install apktool or set APKTOOL_PATH env var."
                )
            return False
        except Exception as e:
            if self.log:
                self.log.error(f"apktool execution error: {e}")
            return False

    def get_smali_directories(self, output_dir: str) -> List[str]:
        """Return paths to all smali output directories.

        Handles multi-DEX: smali/, smali_classes2/, smali_classes3/, etc.
        """
        smali_dirs = []
        if not os.path.isdir(output_dir):
            return smali_dirs

        for entry in sorted(os.listdir(output_dir)):
            if entry == "smali" or entry.startswith("smali_classes"):
                full_path = os.path.join(output_dir, entry)
                if os.path.isdir(full_path):
                    smali_dirs.append(full_path)

        return smali_dirs