Ovidiu Radulescu

54 papers B 5C 1Journal 35Unranked 12

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Automated Hierarchical Block Decomposition of Biochemical Networks. IEEE Trans. Comput. Biol. Bioinform. Manvel Gasparyan, Satya Tamby, Gubbi Vani HarshaRani, Upinder S. Bhalla, Ovidiu Radulescu
2025	J	`jnl`	Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences. CoRR Gavin Farrell, Eleni S. Adamidi, Rafael Andrade Buono, Mihail Anton, Omar Abdelghani Attafi, Salvador Capella-Gutiérrez, Emidio Capriotti, Leyla Jael Castro, Davide Cirillo, Lisa C. Crossman, Christophe Dessimoz, Alexandros C. Dimopoulos, Raúl Fernández-Díaz, Styliani-Christina Fragkouli, Carole A. Goble, Wei Gu, John M. Hancock, Alireza Khanteymoori, Tom Lenaerts, Fabio G. Liberante, Peter Maccallum, Alexander Miguel Monzon, Magnus Palmblad, Lucy Poveda, Ovidiu Radulescu, Denis C. Shields, Shoaib Sufi, Thanasis Vergoulis, Fotis E. Psomopoulos, Silvio C. E. Tosatto
2024	J	`jnl`	A Computational Approach to Polynomial Conservation Laws. SIAM J. Appl. Dyn. Syst. Aurélien Desoeuvres, Alexandru Iosif, Christoph Lüders, Ovidiu Radulescu, Hamid Rahkooy, Matthias Seiß, Thomas Sturm
2024	J	`jnl`	A skin microbiome model with AMP interactions and analysis of quasi-stability vs stability in population dynamics. Theor. Comput. Sci. Eléa Thibault Greugny, François Fages, Ovidiu Radulescu, Peter Szmolyan, Georgios N. Stamatas
2024	J	`jnl`	Mathematical basis and toolchain for hierarchical optimization of biochemical networks. PLoS Comput. Biol. Nisha A. Viswan, Alexandre Tribut, Manvel Gasparyan, Ovidiu Radulescu, Upinder S. Bhalla
2024	J	`jnl`	Reduction of Chemical Reaction Networks with Approximate Conservation Laws. SIAM J. Appl. Dyn. Syst. Aurélien Desoeuvres, Alexandru Iosif, Christoph Lüders, Ovidiu Radulescu, Hamid Rahkooy, Matthias Seiß, Thomas Sturm
2023	J	`jnl`	A Skin Microbiome Model with AMP interactions and Analysis of Quasi-Stability vs Stability in Population Dynamics. CoRR Eléa Thibault Greugny, François Fages, Ovidiu Radulescu, Peter Szmolyan, Georgios N. Stamatas
2023	—	`conf`	Efficient 3D reconstruction of whole slide images in melanoma. Digital and Computational Pathology J. Arslan, Mehdi Ounissi, H. Luo, M. Lacroix, P. Dupré, P. Kumar, Arran Hodgkinson, S. Dandou, Romain M. Larive, C. Pignodel, L. Le Cam, Ovidiu Radulescu, Daniel Racoceanu
2022	J	`jnl`	ODEbase: A Repository of ODE Systems for Systems Biology. CoRR Christoph Lüders, Thomas Sturm, Ovidiu Radulescu
2022	—	`conf`	Qualitative Dynamics of Chemical Reaction Networks: An Investigation Using Partial Tropical Equilibrations. CMSB Aurélien Desoeuvres, Peter Szmolyan, Ovidiu Radulescu
2022	J	`jnl`	Qualitative dynamics of chemical reaction networks: an investigation using partial tropical equilibrations. CoRR Aurélien Desoeuvres, Peter Szmolyan, Ovidiu Radulescu
2021	J	`jnl`	Algorithmic Reduction of Biological Networks with Multiple Time Scales. Math. Comput. Sci. Niclas Kruff, Christoph Lüders, Ovidiu Radulescu, Thomas Sturm, Sebastian Walcher
2021	—	`conf`	LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales. CMSB Marion Buffard, Aurélien Desoeuvres, Aurélien Naldi, Clément Requilé, Andrei Yu. Zinovyev, Ovidiu Radulescu
2021	J	`jnl`	Push-forward method for piecewise deterministic biochemical simulations. Theor. Comput. Sci. Guilherme C. P. Innocentini, Arran Hodgkinson, Fernando Antoneli, Arnaud Debussche, Ovidiu Radulescu
2020	B	`conf`	A Linear Algebra Approach for Detecting Binomiality of Steady State Ideals of Reversible Chemical Reaction Networks. CASC Hamid Rahkooy, Ovidiu Radulescu, Thomas Sturm
2020	J	`jnl`	Algorithmic Reduction of Biological Networks With Multiple Time Scales. CoRR Niclas Kruff, Christoph Lüders, Ovidiu Radulescu, Thomas Sturm, Sebastian Walcher
2020	J	`jnl`	Identifying the parametric occurrence of multiple steady states for some biological networks. J. Symb. Comput. Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber
2020	—	`conf`	Interval Constraint Satisfaction and Optimization for Biological Homeostasis and Multistationarity. CMSB Aurélien Desoeuvres, Gilles Trombettoni, Ovidiu Radulescu
2020	B	`conf`	Tropical Geometry of Biological Systems (Invited Talk). CASC Ovidiu Radulescu
2019	J	`jnl`	An in silico analysis of robust but fragile gene regulation links enhancer length to robustness. PLoS Comput. Biol. Kenneth Barr, John Reinitz, Ovidiu Radulescu
2019	—	`conf`	Effective Computational Methods for Hybrid Stochastic Gene Networks. CMSB Guilherme C. P. Innocentini, Fernando Antoneli, Arran Hodgkinson, Ovidiu Radulescu
2019	J	`jnl`	Identifying the Parametric Occurrence of Multiple Steady States for some Biological Networks. CoRR Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber
2019	—	`ch.`	Metastable Regimes and Tipping Points of Biochemical Networks with Potential Applications in Precision Medicine. Automated Reasoning for Systems Biology and Medicine Satya Swarup Samal, Jeyashree Krishnan, Ali Hadizadeh Esfahani, Christoph Lüders, Andreas Weber, Ovidiu Radulescu
2018	J	`jnl`	The SYMBIONT project: symbolic methods for biological networks. ACM Commun. Comput. Algebra François Boulier, François Fages, Ovidiu Radulescu, Satya Swarup Samal, Andreas Schuppert, Werner M. Seiler, Thomas Sturm, Sebastian Walcher, Andreas Weber
2017	B	`conf`	A Case Study on the Parametric Occurrence of Multiple Steady States. ISSAC Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber
2017	J	`jnl`	A Case Study on the Parametric Occurrence of Multiple Steady States. CoRR Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber
2017	J	`jnl`	Centralized Networks to Generate Human Body Motions. Sensors Sergei Vakulenko, Ovidiu Radulescu, Ivan Morozov, Andreas Weber
2017	J	`jnl`	Far-From-Equilibrium Time Evolution between Two Gamma Distributions. Entropy Eun-Jin Kim, Lucille-Marie Tenkès, Rainer Hollerbach, Ovidiu Radulescu
2017	J	`jnl`	Linking metabolic network features to phenotypes using sparse group lasso. Bioinform. Satya Swarup Samal, Ovidiu Radulescu, Andreas Weber, Holger Fröhlich
2017	J	`jnl`	Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells. PLoS Comput. Biol. Aurélien Naldi, Romain M. Larive, Urszula Czerwinska, Serge Urbach, Philippe Montcourrier, Christian Roy, Jérôme Solassol, Gilles Freiss, Peter J. Coopman, Ovidiu Radulescu
2017	B	`conf`	Symbolic Versus Numerical Computation and Visualization of Parameter Regions for Multistationarity of Biological Networks. CASC Matthew England, Hassan Errami, Dima Grigoriev, Ovidiu Radulescu, Thomas Sturm, Andreas Weber
2017	J	`jnl`	Symbolic Versus Numerical Computation and Visualization of Parameter Regions for Multistationarity of Biological Networks. CoRR Matthew England, Hassan Errami, Dima Grigoriev, Ovidiu Radulescu, Thomas Sturm, Andreas Weber
2016	J	`jnl`	Geometric analysis of pathways dynamics: Application to versatility of TGF-β receptors. Biosyst. Satya Swarup Samal, Aurélien Naldi, Dima Grigoriev, Andreas Weber, Nathalie Théret, Ovidiu Radulescu
2016	—	`conf`	Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry. CMSB Jasha Sommer-Simpson, John Reinitz, Leonid Fridlyand, Louis Philipson, Ovidiu Radulescu
2015	B	`conf`	Analysis of Reaction Network Systems Using Tropical Geometry. CASC Satya Swarup Samal, Dima Grigoriev, Holger Fröhlich, Ovidiu Radulescu
2015	—	`conf`	Symbolic Dynamics of Biochemical Pathways as Finite States Machines. CMSB Ovidiu Radulescu, Satya Swarup Samal, Aurélien Naldi, Dima Grigoriev, Andreas Weber
2014	J	`jnl`	A constraint solving approach to model reduction by tropical equilibration. Algorithms Mol. Biol. Sylvain Soliman, François Fages, Ovidiu Radulescu
2013	—	`conf`	A hybrid mammalian cell cycle model. HSB Vincent Noël, Sergey Vakulenko, Ovidiu Radulescu
2013	J	`jnl`	Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways. BMC Syst. Biol. Partho Sen, Henri J. Vial, Ovidiu Radulescu
2012	J	`jnl`	Flexible and Robust Networks. J. Bioinform. Comput. Biol. Sergei Vakulenko, Ovidiu Radulescu
2012	J	`jnl`	Flexible and Robust Patterning by Centralized Gene Networks. Fundam. Informaticae Sergei Vakulenko, Ovidiu Radulescu
2012	—	`conf`	Hybrid models of the cell cycle molecular machinery HSB Vincent Noel, Dima Grigoriev, Sergei Vakulenko, Ovidiu Radulescu
2011	C	`conf`	Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle Regulation. WABI Vincent Noel, Sergei Vakulenko, Ovidiu Radulescu
2011	J	`jnl`	Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. Carito Guziolowski, Sylvain Blachon, Tatiana Baumuratova, Gautier Stoll, Ovidiu Radulescu, Anne Siegel
2011	J	`jnl`	Genetically Regulated Metabolic Networks: Gale-Nikaido Modules and Differential Inequalities. Trans. Comp. Sys. Biology Ovidiu Radulescu, Anne Siegel, Elisabeth Pécou, Clément Chatelain, Sandrine Lagarrigue
2011	—	`conf`	Tropical Geometries and Dynamics of Biochemical Networks Application to Hybrid Cell Cycle Models. SASB Vincent Noel, Dima Grigoriev, Sergei Vakulenko, Ovidiu Radulescu
2010	J	`jnl`	Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network. BMC Syst. Biol. Tatiana Baumuratova, Didier Surdez, Bernard Delyon, Gautier Stoll, Olivier Delattre, Ovidiu Radulescu, Anne Siegel
2009	J	`jnl`	Canalization of Gene Expression and Domain Shifts in the PLoS Comput. Biol. Manu, Svetlana Surkova, Alexander V. Spirov, Vitaly V. Gursky, Hilde Janssens, Ah-Ram Kim, Ovidiu Radulescu, Carlos E. Vanario-Alonso, David H. Sharp, Maria Samsonova, John Reinitz
2009	J	`jnl`	Hybrid stochastic simplifications for multiscale gene networks. BMC Syst. Biol. Alina Crudu, Arnaud Debussche, Ovidiu Radulescu
2009	—	`conf`	Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks. AIAI (Workshops) Sylvain Blachon, Gautier Stoll, Carito Guziolowski, Andrei Yu. Zinovyev, Emmanuel Barillot, Anne Siegel, Ovidiu Radulescu
2008	—	`conf`	Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets. CIBB Carito Guziolowski, Jeremy Gruel, Ovidiu Radulescu, Anne Siegel
2008	J	`jnl`	Inferring the role of transcription factors in regulatory networks. BMC Bioinform. Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel
2008	J	`jnl`	Robust simplifications of multiscale biochemical networks. BMC Syst. Biol. Ovidiu Radulescu, Alexander N. Gorban, Andrei Yu. Zinovyev, Alain Lilienbaum
2007	J	`jnl`	Théorèmes limites pour les processus de Markov à sauts. Tech. Sci. Informatiques Ovidiu Radulescu, Aurélie Muller, Alina Crudu