Oswaldo Trelles

63 papers B 1C 6Misc 3Journal 30Unranked 23
YearRankTypeTitle / Venue / Authors
2023 J jnl
Irregular alignment of arbitrarily long DNA sequences on GPU.
J. Supercomput.
Esteban Pérez-Wohlfeil, Oswaldo Trelles, Nicolás Guil
2020 J jnl
PLIDflow: an open-source workflow for the online analysis of protein-ligand docking using galaxy.
Bioinform.
Eugenia Ulzurrun, Yorley Duarte, Esteban Pérez-Wohlfeil, Fernando D. González Nilo, Oswaldo Trelles
2018 — conf
Analyzing the Differences Between Reads and Contigs When Performing a Taxonomic Assignment Comparison in Metagenomics.
IWBBIO (1)
Pablo Rodríguez-Brazzarola, Esteban Pérez-Wohlfeil, Sergio Díaz Del Pino, Ricardo Holthausen, Oswaldo Trelles
2018 J jnl
Precise and Parallel Pairwise Metagenomic Comparisons.
J. Comput. Biol.
Esteban Pérez-Wohlfeil, Oswaldo Trelles
2018 — conf
Workflows and Service Discovery: A Mobile Device Approach.
IWBBIO (1)
Ricardo Holthausen, Sergio Díaz Del Pino, Esteban Pérez-Wohlfeil, Pablo Rodríguez-Brazzarola, Oswaldo Trelles
2018 J jnl
mORCA: sailing bioinformatics world with mobile devices.
Bioinform.
Sergio Díaz Del Pino, Juan Falgueras Cano, Esteban Pérez-Wohlfeil, Oswaldo Trelles
2017 C conf
Accelerating Exhaustive Pairwise Metagenomic Comparisons.
ICA3PP
Esteban Pérez-Wohlfeil, Óscar Torreño Tirado, Oswaldo Trelles
2017 J jnl
Building an open source cloud environment with auto-scaling resources for executing bioinformatics and biomedical workflows.
Future Gener. Comput. Syst.
Michael T. Krieger, Óscar Torreño Tirado, Oswaldo Trelles, Dieter Kranzlmüller
2017 — conf
Pairwise and Incremental Multi-stage Alignment of Metagenomes: A New Proposal.
IWBBIO (2)
Esteban Pérez-Wohlfeil, Óscar Torreño Tirado, Oswaldo Trelles
2017 J jnl
Two level parallelism and I/O reduction in genome comparisons.
Clust. Comput.
Óscar Torreño Tirado, Oswaldo Trelles
2016 — conf
A Framework for Accessible Cluster-Enabled Epistatic Analysis.
Euro-Par Workshops
Alex Upton, Johan Karlsson, Oswaldo Trelles, Miguel Hernandez, Juan Elvira
2016 J jnl
Review: High-performance computing to detect epistasis in genome scale data sets.
Briefings Bioinform.
Alex Upton, Oswaldo Trelles, José Antonio Cornejo-García, James Richard Perkins
2016 — conf
Two-Level Parallelism to Accelerate Multiple Genome Comparisons.
Euro-Par Workshops
Óscar Torreño Tirado, Oswaldo Trelles
2015 J jnl
Breaking the computational barriers of pairwise genome comparison.
BMC Bioinform.
Óscar Torreño Tirado, Oswaldo Trelles
2015 — conf
Computational Synteny Block: A framework to identify evolutionary events.
BIBM
Jose A. Arjona-Medina, Oswaldo Trelles
2015 Misc conf
Epistatic Analysis of Clarkson Disease.
ICCS
Alex Upton, Oswaldo Trelles, James Richard Perkins
2015 — conf
Mobile Access to On-line Analytic Bioinformatics Tools.
IWBBIO (2)
Sergio Díaz Del Pino, Tor Johan Mikael Karlsson, Juan Falgueras Cano, Oswaldo Trelles
2015 Misc conf
Pairwise Genome Comparison Workflow in the Cloud Using Galaxy.
ICCS
Óscar Torreño Tirado, Michael T. Krieger, Paul Heinzlreiter, Oswaldo Trelles
2014 C conf
A Cloud-based GWAS Analysis Pipeline for Clinical Researchers.
CLOSER
Paul Heinzlreiter, James Richard Perkins, Óscar Torreño Tirado, Tor Johan Mikael Karlsson, Juan Antonio Ranea, Andreas Mitterecker, Miguel Blanca, Oswaldo Trelles
2013 — conf
Bio-Cirrus: A Framework for Running Legacy Bioinformatics Applications with Cloud Computing Resources.
IWANN (2)
Tor Johan Mikael Karlsson, Óscar Torreño Tirado, Daniel Ramet Barea, Juan Lago, Juan Falgueras Cano, Noura Chelbat, Oswaldo Trelles
2013 J jnl
MAPI: a software framework for distributed biomedical applications.
J. Biomed. Semant.
Tor Johan Mikael Karlsson, Oswaldo Trelles
2012 C conf
Enabling Large-Scale Bioinformatics Data Analysis with Cloud Computing.
ISPA
Tor Johan Mikael Karlsson, Óscar Torreño Tirado, Daniel Ramet Barea, Günter Klambauer, Miriam Cano Castillo, Oswaldo Trelles
2011 J jnl
MAPI: towards the integrated exploitation of bioinformatics Web Services.
BMC Bioinform.
Sergio Ramírez, Tor Johan Mikael Karlsson, Oswaldo Trelles
2011 J jnl
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
J. Biomed. Semant.
Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi
2011 C conf
Using Graphics Processors for a High Performance Normalization of Gene Expressions.
HPCC
Andrés Rodríguez Moreno, Oswaldo Trelles, Manuel Ujaldon
2010 J jnl
MOWServ: a web client for integration of bioinformatic resources.
Nucleic Acids Res.
Sergio Ramírez, Antonio Muñoz-Merida, Tor Johan Mikael Karlsson, Maximiliano García, Antonio J. Pérez-Pulido, M. Gonzalo Claros, Oswaldo Trelles
2010 — conf
Statistical Significance for NGS Reads Similarities.
JBI
Antonio Muñoz-Merida, Javier Ríos, Hicham Benzekri, Oswaldo Trelles
2010 J jnl
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.
J. Biomed. Semant.
Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
2010 — conf
Web service catalogue for Biomedical Grid infrastructure.
HealthGrid
Maximiliano García, Tor Johan Mikael Karlsson, Oswaldo Trelles
2010 — conf
Workflow Composition and Enactment Using jORCA.
ISoLA (1)
Tor Johan Mikael Karlsson, Victoria Martin-Requena, Javier Ríos, Oswaldo Trelles
2010 — conf
jORCA and Magallanes Sailing Together towards Integration of Web Services.
JBI
Tor Johan Mikael Karlsson, Oswaldo Trelles
2010 J jnl
jORCA: easily integrating bioinformatics Web Services.
Bioinform.
Victoria Martin-Requena, Javier Ríos, Maximiliano García, Sergio Ramírez, Oswaldo Trelles
2009 J jnl
Magallanes: a web services discovery and automatic workflow composition tool.
BMC Bioinform.
Javier Ríos, Tor Johan Mikael Karlsson, Oswaldo Trelles
2009 J jnl
PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data.
BMC Bioinform.
Victoria Martin-Requena, Antonio Muñoz-Merida, M. Gonzalo Claros, Oswaldo Trelles
2008 — conf
A Semantic Grid Services Architecture in Support of Efficient Knowledge Discovery from Multilevel Clinical and Genomic Datasets.
HEALTHINF (1)
Manolis Tsiknakis, Stelios Sfakianakis, Stefan Rüping, Oswaldo Trelles, Thierry Siestang, Brecht Claerhout, Vassilis Virvilis
2008 J jnl
Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons.
BMC Bioinform.
Sacha A. F. T. van Hijum, Richard J. S. Baerends, Aldert L. Zomer, Harma A. Karsens, Victoria Martin-Requena, Oswaldo Trelles, Jan Kok, Oscar P. Kuipers
2007 — conf
On-line Distance Learning Platform.
WEBIST (3)
Sergio Ramírez, Hugo Rosales, Oswaldo Trelles
2006 J jnl
Bio-Broker: a tool for integration of biological data sources and data analysis tools.
Softw. Pract. Exp.
José Francisco Aldana-Montes, M. Roldán-Castro, Ismael Navas-Delgado, María del Mar Roldán-García, Manuel Hidalgo-Conde, Oswaldo Trelles
2006 — conf
Distributed Execution of Workflows in the INB.
DILS
Ismael Navas-Delgado, Antonio J. Pérez-Pulido, José Francisco Aldana-Montes, Oswaldo Trelles
2006 Misc conf
Distributed Execution of Workflows.
International Conference on Computational Science (3)
Ismael Navas-Delgado, José Francisco Aldana-Montes, Oswaldo Trelles
2006 J jnl
Integrated analysis of gene expression by association rules discovery.
BMC Bioinform.
Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano
2006 J jnl
Intelligent client for integrating bioinformatics services.
Bioinform.
Ismael Navas-Delgado, Maria del Mar Rojano-Muñoz, Sergio Ramírez, Antonio J. Pérez-Pulido, Eduardo Andrés León, José Francisco Aldana-Montes, Oswaldo Trelles
2005 — conf
Adaptive Task Scheduling in Computational GRID Environments.
EGC
Manuel Hidalgo-Conde, Andrés Rodríguez Moreno, Sergio Ramírez, Oswaldo Trelles
2005 J jnl
Analysis and Description of the Semantic Content of Cell Biological Videos.
Multim. Tools Appl.
Andrés Rodríguez Moreno, Nicolás Guil, David M. Shotton, Oswaldo Trelles
2005 C conf
Bio-Broker: a biological data and services mediator system.
IADIS AC
José Francisco Aldana-Montes, Manuel Hidalgo-Conde, Ismael Navas-Delgado, María del Mar Roldán-García, Oswaldo Trelles
2005 — conf
Real-Time Simulation for Laser-Tissue Interaction Model.
PARCO
Luis F. Romero, Oswaldo Trelles, M. A. Trelles
2005 — conf
Services Integration and Task-scheduling in Bioinformatics Grids.
PARCO
Sergio Ramírez, Enrique de-Andrés, Ismael Navas-Delgado, Antonio J. Pérez-Pulido, José Francisco Aldana-Montes, Oswaldo Trelles
2004 — conf
An Open Architecture for the Dynamic Integration of Biological Data Sources.
CCCT (1)
José Francisco Aldana-Montes, Manuel Hidalgo-Conde, Ismael Navas-Delgado, María del Mar Roldán-García, Pedro A. de Alarcón, Oswaldo Trelles
2004 J jnl
AnaGram: protein function assignment.
Bioinform.
Antonio J. Pérez-Pulido, Guillermo Thode, Oswaldo Trelles
2004 J jnl
Automatic analysis of the content of cell biological videos and database organization of their metadata descriptors.
IEEE Trans. Multim.
Andrés Rodríguez Moreno, Nicolás Guil, David M. Shotton, Oswaldo Trelles
2003 J jnl
Engene: the processing and exploratory analysis of gene expression data.
Bioinform.
Jorge García de la Nava, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles, Alberto D. Pascual-Montano
2003 J jnl
PreP: gene expression data pre-processing.
Bioinform.
Jorge García de la Nava, Sacha A. F. T. van Hijum, Oswaldo Trelles
2003 — conf
Weighting and Feature Selection on Gene-Expression Data by the Use of Genetic Algorithms.
IWANN (2)
Olga M. Perez, Manuel Hidalgo-Conde, Francisco Javier Marín Martín, Oswaldo Trelles
2002 J jnl
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE).
Softw. Pract. Exp.
Carlos Oscar Sánchez Sorzano, José María Carazo, Oswaldo Trelles
2001 — conf
Improving Biological Sequence Property Distances by Using a Genetic Algorithm.
IWANN (2)
Olga M. Perez, Francisco Javier Marín Martín, Oswaldo Trelles
2001 J jnl
On the Parallelisation of Bioinformatics Applications.
Briefings Bioinform.
Oswaldo Trelles
2000 — conf
Automatic Feature extraction in Wound Healing Videos.
RIAO
Andrés Rodríguez Moreno, David M. Shotton, Oswaldo Trelles, Nicolás Guil
2000 — conf
Automatic Tracking of Moving Bacterial Cells in Scientific Videos.
RIAO
Andrés Rodríguez Moreno, David M. Shotton, Nicolás Guil, Oswaldo Trelles
2000 B conf
Object Tracking and Event Recognition in Biological Microscopy Videos.
ICPR
David M. Shotton, Andrés Rodríguez Moreno, Nicolás Guil, Oswaldo Trelles
1998 C conf
Biological sequence analysis on distributed-shared memory multiprocessors.
PDP
Andrés Rodríguez Moreno, Luis Gerardo de la Fraga, Emilio L. Zapata, José María Carazo, Oswaldo Trelles
1998 J jnl
Computational space reduction and parallelization of a new clustering approach for large groups of sequences.
Bioinform.
Oswaldo Trelles, Miguel A. Andrade, Alfonso Valencia, Emilio L. Zapata, José María Carazo
1998 J jnl
New phylogenetic venues opened by a novel implementation of the DNAml algorithm.
Bioinform.
Oswaldo Trelles, C. Ceron, Huaichun Wang, Joaquín Dopazo, José María Carazo
1998 J jnl
Parallel Implementation of DNAml Program on Message-Passing Architectures.
Parallel Comput.
C. Ceron, Joaquín Dopazo, Emilio L. Zapata, José María Carazo, Oswaldo Trelles