Osmar Norberto de Souza

33 papers B 1C 1Misc 3Journal 14Unranked 13
YearRankTypeTitle / Venue / Authors
2026 J jnl
Enhancing Accessibility in Structural Bioinformatics: A Systematic Review of Interactive Systems for Visually Impaired Users.
Int. J. Hum. Comput. Interact.
Vanessa Stangherlin Machado Paixão-Cortes, Juliana Damasio Oliveira, Osmar Norberto de Souza
2019 — conf
Development and Usability Evaluation of a Prototype Conversational Interface for Biological Information Retrieval via Bioinformatics.
HCI (4)
Walter Ritzel Paixão-Cortes, Vanessa Stangherlin Machado Paixão-Cortes, Cristiane Ellwanger, Osmar Norberto de Souza
2018 — conf
A Panorama on Selection and Use of Bioinformatics Tools in the Brazilian University Context.
HCI (8)
Vanessa Stangherlin Machado Paixão-Cortes, Walter Ritzel Paixão-Cortes, Márcia de Borba Campos, Osmar Norberto de Souza
2018 J jnl
A selective method for optimizing ensemble docking-based experiments on an InhA Fully-Flexible receptor model.
BMC Bioinform.
Renata De Paris, Christian Vahl Quevedo, Duncan D. Ruiz, Furia Gargano, Osmar Norberto de Souza
2018 J jnl
Usability as the Key Factor to the Design of a Web Server for the CReF Protein Structure Predictor: The wCReF.
Inf.
Vanessa Stangherlin Machado Paixão-Cortes, Michele dos Santos da Silva Tanus, Walter Ritzel Paixão-Cortes, Osmar Norberto de Souza, Márcia de Borba Campos, Milene Selbach Silveira
2017 — conf
Decision-Making for Interactive Systems: A Case Study for Teaching and Learning in Bioinformatics.
HCI (26)
Vanessa Stangherlin Machado, Walter Ritzel Paixão-Cortes, Osmar Norberto de Souza, Márcia de Borba Campos
2016 — conf
A Multiagent Ab Initio Protein Structure Prediction Tool for Novices and Experts.
ISBRA
Thiago Lipinski-Paes, Michele dos Santos da Silva Tanus, José Fernando Ruggiero Bachega, Osmar Norberto de Souza
2015 C conf
A Cloud-Based Workflow Approach for Optimizing Molecular Docking Simulations of Fully-Flexible Receptor Models and Multiple Ligands.
CloudCom
Renata De Paris, Duncan Dubugras A. Ruiz, Osmar Norberto de Souza
2015 J jnl
Clustering Molecular Dynamics Trajectories for Optimizing Docking Experiments.
Comput. Intell. Neurosci.
Renata De Paris, Christian Vahl Quevedo, Duncan Dubugras A. Ruiz, Osmar Norberto de Souza, Rodrigo C. Barros
2015 Misc conf
P-SaMI: a data-flow pattern to perform massively-parallel molecular docking experiments using a fully-flexible receptor model.
SAC
Patricia Hübler, Duncan Dubugras A. Ruiz, João Eduardo Ferreira, Osmar Norberto de Souza
2014 J jnl
A strategic solution to optimize molecular docking simulations using Fully-Flexible Receptor models.
Expert Syst. Appl.
Christian Vahl Quevedo, Renata De Paris, Duncan D. Ruiz, Osmar Norberto de Souza
2014 — conf
MASTERS: A General Sequence-based MultiAgent System for Protein TERtiary Structure Prediction.
CS2Bio
Thiago Lipinski-Paes, Osmar Norberto de Souza
2013 J jnl
An expert protein loop refinement protocol by molecular dynamics simulations with restraints.
Expert Syst. Appl.
Karina C. M. Dall'Agno, Osmar Norberto de Souza
2013 J jnl
An interval-based algorithm to represent conformational states of experimentally determined polypeptide templates and fast prediction of approximated 3D protein structures.
Int. J. Bioinform. Res. Appl.
Márcio Dorn, Osmar Norberto de Souza
2013 J jnl
Discovery of New Inhibitors of
J. Chem. Inf. Model.
Ivani Pauli, Ricardo N. dos Santos, Diana C. Rostirolla, Leonardo K. Martinelli, Rodrigo G. Ducati, Luís Fernando S. M. Timmers, Luiz Augusto Basso, Diógenes Santiago Santos, Rafael V. C. Guido, Adriano Defini Andricopulo, Osmar Norberto de Souza
2012 — conf
A Comparative Analysis of Public Ligand Databases Based on Molecular Descriptors.
BSB
Ana T. Winck, Christian Vahl Quevedo, Karina S. Machado, Osmar Norberto de Souza, Duncan D. Ruiz
2012 J jnl
Automatic design of decision-tree induction algorithms tailored to flexible-receptor docking data.
BMC Bioinform.
Rodrigo C. Barros, Ana T. Winck, Karina S. Machado, Márcio P. Basgalupp, André Carlos Ponce de Leon Ferreira de Carvalho, Duncan D. Ruiz, Osmar Norberto de Souza
2011 — conf
A Conceptual Many Tasks Computing Architecture to Execute Molecular Docking Simulations of a Fully-Flexible Receptor Model.
BSB
Renata De Paris, Fábio A. Frantz, Osmar Norberto de Souza, Duncan D. Ruiz
2011 — ed.
Advances in Bioinformatics and Computational Biology - 6th Brazilian Symposium on Bioinformatics, BSB 2011, Brasilia, Brazil, August 10-12, 2011. Proceedings
BSB
Osmar Norberto de Souza, Guilherme P. Telles, Mathew J. Palakal
2011 J jnl
Mining flexible-receptor molecular docking data.
WIREs Data Mining Knowl. Discov.
Karina S. Machado, Ana T. Winck, Duncan D. Ruiz, Osmar Norberto de Souza
2010 J jnl
A3N: An artificial neural network n-gram-based method to approximate 3-D polypeptides structure prediction.
Expert Syst. Appl.
Márcio Dorn, Osmar Norberto de Souza
2010 — conf
Discretization of Flexible-Receptor Docking Data.
BSB
Karina S. Machado, Ana T. Winck, Duncan D. Ruiz, Osmar Norberto de Souza
2010 J jnl
Mining the Protein Data Bank with CReF to predict approximate 3-D structures of polypeptides.
Int. J. Data Min. Bioinform.
Márcio Dorn, Osmar Norberto de Souza
2009 — conf
FReDD: Supporting Mining Strategies through a Flexible-Receptor Docking Database.
BSB
Ana T. Winck, Karina S. Machado, Osmar Norberto de Souza, Duncan D. Ruiz
2008 — conf
A Hybrid Method for the Protein Structure Prediction Problem.
BSB
Márcio Dorn, Ardala Breda, Osmar Norberto de Souza
2008 Misc conf
CReF: a central-residue-fragment-based method for predicting approximate 3-D polypeptides structures.
SAC
Márcio Dorn, Osmar Norberto de Souza
2008 — conf
Extracting Information from Flexible Receptor-Flexible Ligand Docking Experiments.
BSB
Karina S. Machado, Evelyn K. Schroeder, Duncan D. Ruiz, Ana Wink, Osmar Norberto de Souza
2007 J jnl
A structural model for chorismate synthase from Mycobacterium tuberculosis in complex with coenzyme and substrate.
Comput. Biol. Medicine
Cláudia Lemelle Fernandes, Ardala Breda, Diógenes Santiago Santos, Luiz Augusto Basso, Osmar Norberto de Souza
2007 — conf
Automating Molecular Docking with Explicit Receptor Flexibility Using Scientific Workflows.
BSB
Karina S. Machado, Evelyn K. Schroeder, Duncan D. Ruiz, Osmar Norberto de Souza
2005 Misc conf
A framework for result handling in bioinformatics: an application to computer assisted drug design.
SAC
Andrei Oliveira da Silva, Osmar Norberto de Souza
2005 B conf
Scheduling complex computer simulations on heterogeneous non-dedicated machines: a case study in structural bioinformatics.
CCGRID
Marco Aurélio Stelmar Netto, Ardala Breda, Osmar Norberto de Souza
2005 — conf
Structure Prediction and Docking Studies of Chorismate Synthase from
BSB
Cláudia Lemelle Fernandes, Diógenes Santiago Santos, Luiz Augusto Basso, Osmar Norberto de Souza
1994 J jnl
Molecular dynamics simulations of oligonucleotides in solution: Visualisation of intrinsic curvature.
J. Comput. Aided Mol. Des.
Osmar Norberto de Souza, Julia M. Goodfellow