Osman Ugur Sezerman

37 papers A 1B 1Journal 20Unranked 15
YearRankTypeTitle / Venue / Authors
2025 J jnl
Privacy-Preserving Machine Learning (PPML) Inference for Clinically Actionable Models.
IEEE Access
Baris Balaban, Seyma Selcan Magara, Caglar Yilgor, Altug Yucekul, Ibrahim Obeid, Javier Pizones, Frank Kleinstueck, Francisco Javier Sanchez Perez-Grueso, Ferran Pellisé, Ahmet Alanay, Erkay Savas, Çetin Bagci, Osman Ugur Sezerman, European Spine Study Group
2023 J jnl
PANACEA: network-based methods for pharmacotherapy prioritization in personalized oncology.
Bioinform.
Ege Ülgen, Ozan Ozisik, Osman Ugur Sezerman
2021 J jnl
A framework for validating AI in precision medicine: considerations from the European ITFoC consortium.
BMC Medical Informatics Decis. Mak.
Rosy Tsopra, Xosé M. Fernández, Claudio Luchinat, Lilia Alberghina, Hans Lehrach, Marco Vanoni, Felix Dreher, Osman Ugur Sezerman, Marc Cuggia, Marie de Tayrac, Edvins Miklasevics, Lucian Mihai Itu, Marius Geanta, Lesley Ogilvie, Florence Godey, Cristian Nicolae Boldisor, Boris Campillo-Gimenez, Cosmina Cioroboiu, Costin Florian Ciusdel, Simona Coman, Oliver Hijano Cubelos, Alina Itu, Bodo Lange, Matthieu Le Gallo, Alexandra Lespagnol, Giancarlo Mauri, H. Okan Soykam, Bastien Rance, Paola Turano, Leonardo Tenori, Alessia Vignoli, Christoph Wierling, Nora Benhabiles, Anita Burgun
2021 J jnl
CogNet: classification of gene expression data based on ranked active-subnetwork-oriented KEGG pathway enrichment analysis.
PeerJ Comput. Sci.
Malik Yousef, Ege Ülgen, Osman Ugur Sezerman
2021 J jnl
driveR: a novel method for prioritizing cancer driver genes using somatic genomics data.
BMC Bioinform.
Ege Ülgen, Osman Ugur Sezerman
2018 J jnl
Prediction of HIV Drug Resistance by Combining Sequence and Structural Properties.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zoya Khalid, Osman Ugur Sezerman
2018 J jnl
Thermostability of the PYL-PP2C Heterodimer Is Dependent on Magnesium: In Silico Insights into the Link between Heat Stress Response and Magnesium Deficiency in Plants.
J. Chem. Inf. Model.
Emel Timuçin, Osman Ugur Sezerman
2017 J jnl
ZK DrugResist 2.0: A TextMiner to extract semantic relations of drug resistance from PubMed.
J. Biomed. Informatics
Zoya Khalid, Osman Ugur Sezerman
2016 — conf
ZK Drugresist - Automatic Extraction of Drug Resistance Mutations and Expression Level Changes from Medline Abstracts.
BIOINFORMATICS
Zoya Khalid, Osman Ugur Sezerman
2015 — conf
Bioinformatics Challenges and Potentialities in Studying Extreme Environments.
CIBB
Claudio Angione, Pietro Liò, Sandra Pucciarelli, Basarbatu Can, Maxwell Conway, Marina Lotti, Habib Bokhari, Alessio Mancini, Osman Ugur Sezerman, Andrea Telatin
2015 J jnl
Prediction of neddylation sites from protein sequences and sequence-derived properties.
BMC Bioinform.
Ahmet Sinan Yavuz, Namik Berk Sözer, Osman Ugur Sezerman
2014 J jnl
PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data.
Bioinform.
Burcu Bakir-Gungor, Ece Egemen, Osman Ugur Sezerman
2013 J jnl
Prediction of peptides binding to MHC class I and II alleles by temporal motif mining.
BMC Bioinform.
Cem Meydan, Hasan H. Otu, Osman Ugur Sezerman
2013 J jnl
Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure.
BMC Bioinform.
Yasin Bakis, Hasan H. Otu, Nivart Taçi, Cem Meydan, Nee Bilgin, Sirri Yüzbaiolu, Osman Ugur Sezerman
2012 — conf
Pattern Recognition for Subfamily Level Classification of GPCRs Using Motif Distillation and Distinguishing Power Evaluation.
PRIB
Ahmet Sinan Yavuz, Bugra Ozer, Osman Ugur Sezerman
2012 — conf
Representation of Protein Secondary Structure Using Bond-Orientational Order Parameters.
PRIB
Cem Meydan, Osman Ugur Sezerman
2011 J jnl
Classification of GPCRs Using Family Specific Motifs.
IEEE ACM Trans. Comput. Biol. Bioinform.
Murat Can Cobanoglu, Yücel Saygin, Osman Ugur Sezerman
2010 J jnl
Biomarker discovery for toxicity.
Neurocomputing
Cem Meydan, Osman Ugur Sezerman
2010 J jnl
Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets.
BMC Bioinform.
Aydin Albayrak, Hasan H. Otu, Osman Ugur Sezerman
2009 J jnl
An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes.
Briefings Bioinform.
Giulia Soldà, Igor V. Makunin, Osman Ugur Sezerman, Alberto Corradin, Giorgio Corti, Alessandro Guffanti
2009 — conf
An entropy based heuristic model for predicting functional sub-type divisions of protein families.
GECCO (Companion)
Deniz Yörükoglu, Yasin Bakis, Osman Ugur Sezerman
2009 J jnl
DockPro: A VR-Based Tool for Protein-Protein Docking Problem.
Int. J. Virtual Real.
Serdar Cakici, Selcuk Sumengen, Osman Ugur Sezerman, Selim Balcisoy
2009 J jnl
EnzyMiner: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts.
BMC Bioinform.
Süveyda Yeniterzi, Osman Ugur Sezerman
2009 — conf
Functional Classification of GPCR Sequences Based On Their Ligand Specific Patterns.
BIOCOMP
Mert Bagcilar, Osman Ugur Sezerman
2009 — conf
Optimization of morphological data in numerical taxonomy analysis using genetic algorithms feature selection method.
GECCO (Companion)
Yasin Bakis, Osman Ugur Sezerman, M. Tekin Babaç, Cem Meydan
2009 — conf
Prediction of Peptides Binding to MHC Class I Alleles by Partial Periodic Pattern Mining.
IJCBS
Cem Meydan, Osman Ugur Sezerman, Hasan H. Otu
2008 — conf
Discovery of Biomarkers for Hexachlorobenzene Toxicity Using Population Based Methods on Gene Expression Data.
PRIB
Cem Meydan, Alper Küçükural, Deniz Yörükoglu, Osman Ugur Sezerman
2008 B conf
Discrimination of Native Folds Using Network Properties of Protein Structures.
APBC
Alper Küçükural, Osman Ugur Sezerman, Aytül Erçil
2008 — conf
DockPro: a VR-based tool for protein-protein docking problem.
VRCAI
Serdar Cakici, Selcuk Sumengen, Osman Ugur Sezerman, Selim Balcisoy
2007 J jnl
Application of Automatic Mutation-gene Pair Extraction to Diseases.
J. Bioinform. Comput. Biol.
Müge Erdogmus, Osman Ugur Sezerman
2007 J jnl
Discrimination of proteins using graph theoretic properties.
BMC Syst. Biol.
Alper Küçükural, Osman Ugur Sezerman
2007 A conf
Evolutionary selection of minimum number of features for classification of gene expression data using genetic algorithms.
GECCO
Alper Küçükural, Reyyan Yeniterzi, Süveyda Yeniterzi, Osman Ugur Sezerman
2007 — conf
Potential Use of Graph Theoretical Properties of Protein Structures in Structural Alignment.
BIOCOMP
Alper Küçükural, Osman Ugur Sezerman
2006 — conf
Functional Classification of G-Protein Coupled Receptors, Based on Their Specific Ligand Coupling Patterns.
EvoWorkshops
Burcu Bakir, Osman Ugur Sezerman
2006 — conf
Modified Association Rule Mining Approach for the MHC-Peptide Binding Problem.
ISCIS
Galip Gürkan Yardimci, Alper Küçükural, Yücel Saygin, Osman Ugur Sezerman
2006 — conf
Prediction and Classification for GPCR Sequences Based on Ligand Specific Features.
ISCIS
Bekir Ergüner, Özgün Erdogan, Osman Ugur Sezerman
2004 — conf
Protein Structural Class Determination Using Support Vector Machines.
ISCIS
Zerrin Isik, Berrin A. Yanikoglu, Osman Ugur Sezerman